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5YTF

Structure of large fragment of DNA Polymerase I from Thermus aquaticus Host-Guest complex with the unnatural base M-fC pair with dA

Functional Information from GO Data
ChainGOidnamespacecontents
A0001882molecular_functionnucleoside binding
A0003676molecular_functionnucleic acid binding
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0006260biological_processDNA replication
A0006261biological_processDNA-templated DNA replication
A0006281biological_processDNA repair
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MG A 901
ChainResidue
AASP610
ATYR611
AASP785
AMG902
ADGT903

site_idAC2
Number of Residues7
Detailsbinding site for residue MG A 902
ChainResidue
AHOH1063
AHOH1122
BDOC112
AASP610
AASP785
AMG901
ADGT903

site_idAC3
Number of Residues24
Detailsbinding site for residue DGT A 903
ChainResidue
AARG573
AASP610
ATYR611
ASER612
AGLN613
AILE614
AGLU615
AHIS639
AARG659
AARG660
ALYS663
APHE667
ATYR671
AASP785
AMG901
AMG902
AHOH1071
AHOH1074
AHOH1086
AHOH1103
AHOH1122
BDOC112
CDC204
CDG205

site_idAC4
Number of Residues3
Detailsbinding site for residue GOL A 904
ChainResidue
ATRP428
APHE724
AHOH1015

site_idAC5
Number of Residues6
Detailsbinding site for residue MG B 201
ChainResidue
BHOH303
BHOH306
BHOH308
BHOH325
BHOH326
CHOH330

Functional Information from PROSITE/UniProt
site_idPS00447
Number of Residues20
DetailsDNA_POLYMERASE_A DNA polymerase family A signature. RraAKtinFGvlYgmSahrL
ChainResidueDetails
AARG659-LEU678

218853

PDB entries from 2024-04-24

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