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5YKA

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with cobalt(II)

Functional Information from GO Data
ChainGOidnamespacecontents
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CO A 401
ChainResidue
AHIS146
AASP148
AHIS260
AHOH534
AHOH536
AHOH623

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 402
ChainResidue
AHOH536
AHOH574
AARG127
APHE150
AARG162

site_idAC3
Number of Residues7
Detailsbinding site for residue SO4 A 403
ChainResidue
ATHR79
ALYS81
ALYS276
AASN278
ASER304
AHOH629
AHOH654

site_idAC4
Number of Residues2
Detailsbinding site for residue SO4 A 404
ChainResidue
APRO75
AARG76

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
AARG76
AALA122
AHIS274
AHOH665

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL A 406
ChainResidue
APRO12
AGLY40
AGLY179
AGLU180
AVAL258
ALEU259
AHOH558
AHOH601
AHOH664

site_idAC7
Number of Residues4
Detailsbinding site for residue PG4 A 407
ChainResidue
APRO151
ASER152
AILE209
AARG214

site_idAC8
Number of Residues10
Detailsbinding site for residue PG4 A 408
ChainResidue
AILE178
AGLY179
ALEU193
ATYR220
AGLN240
AVAL241
ALYS297
AHOH582
AHOH588
AHOH699

site_idAC9
Number of Residues5
Detailsbinding site for residue PG4 A 409
ChainResidue
AALA106
AHIS109
ALEU110
ATYR205
AHOH547

site_idAD1
Number of Residues7
Detailsbinding site for residue PG4 A 410
ChainResidue
AGLY156
AGLY157
ALYS276
AVAL277
AHOH555
AHOH629
AHOH654

site_idAD2
Number of Residues7
Detailsbinding site for residue PG4 A 411
ChainResidue
AARG201
ASER215
ALEU216
ALEU299
ASER301
AHOH578
AHOH670

site_idAD3
Number of Residues2
Detailsbinding site for residue PG4 A 413
ChainResidue
ATYR213
AHOH505

site_idAD4
Number of Residues2
Detailsbinding site for residue PG4 A 414
ChainResidue
AARG177
AASP263

site_idAD5
Number of Residues5
Detailsbinding site for residue ACT A 415
ChainResidue
APHE164
AARG174
ATRP176
AVAL262
ALEU268

site_idAD6
Number of Residues3
Detailsbinding site for residue ACT A 416
ChainResidue
APHE150
APRO151
ASER152

site_idAD7
Number of Residues2
Detailsbinding site for residue ACT A 417
ChainResidue
AGLU292
AHOH501

site_idAD8
Number of Residues6
Detailsbinding site for residue ACT A 418
ChainResidue
APRO154
ATHR155
AGLY156
ALYS211
AHOH505
AHOH507

site_idAD9
Number of Residues3
Detailsbinding site for residue CL A 419
ChainResidue
AGLY199
APHE202
ATYR213

site_idAE1
Number of Residues5
Detailsbinding site for residue CL A 420
ChainResidue
APHE16
AASP17
AILE29
AHOH693
AHOH723

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PDB entries from 2024-07-17

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