5YKA

Crystal structure of the Kdo hydroxylase KdoO, a non-heme Fe(II) alphaketoglutarate dependent dioxygenase in complex with cobalt(II)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue CO A 401

Chain	Residue
A	HIS146
A	ASP148
A	HIS260
A	HOH534
A	HOH536
A	HOH623

---

site_id	AC2
Number of Residues	5
Details	binding site for residue SO4 A 402

Chain	Residue
A	HOH536
A	HOH574
A	ARG127
A	PHE150
A	ARG162

---

site_id	AC3
Number of Residues	7
Details	binding site for residue SO4 A 403

Chain	Residue
A	THR79
A	LYS81
A	LYS276
A	ASN278
A	SER304
A	HOH629
A	HOH654

---

site_id	AC4
Number of Residues	2
Details	binding site for residue SO4 A 404

Chain	Residue
A	PRO75
A	ARG76

---

site_id	AC5
Number of Residues	4
Details	binding site for residue SO4 A 405

Chain	Residue
A	ARG76
A	ALA122
A	HIS274
A	HOH665

---

site_id	AC6
Number of Residues	9
Details	binding site for residue GOL A 406

Chain	Residue
A	PRO12
A	GLY40
A	GLY179
A	GLU180
A	VAL258
A	LEU259
A	HOH558
A	HOH601
A	HOH664

---

site_id	AC7
Number of Residues	4
Details	binding site for residue PG4 A 407

Chain	Residue
A	PRO151
A	SER152
A	ILE209
A	ARG214

---

site_id	AC8
Number of Residues	10
Details	binding site for residue PG4 A 408

Chain	Residue
A	ILE178
A	GLY179
A	LEU193
A	TYR220
A	GLN240
A	VAL241
A	LYS297
A	HOH582
A	HOH588
A	HOH699

---

site_id	AC9
Number of Residues	5
Details	binding site for residue PG4 A 409

Chain	Residue
A	ALA106
A	HIS109
A	LEU110
A	TYR205
A	HOH547

---

site_id	AD1
Number of Residues	7
Details	binding site for residue PG4 A 410

Chain	Residue
A	GLY156
A	GLY157
A	LYS276
A	VAL277
A	HOH555
A	HOH629
A	HOH654

---

site_id	AD2
Number of Residues	7
Details	binding site for residue PG4 A 411

Chain	Residue
A	ARG201
A	SER215
A	LEU216
A	LEU299
A	SER301
A	HOH578
A	HOH670

---

site_id	AD3
Number of Residues	2
Details	binding site for residue PG4 A 413

Chain	Residue
A	TYR213
A	HOH505

---

site_id	AD4
Number of Residues	2
Details	binding site for residue PG4 A 414

Chain	Residue
A	ARG177
A	ASP263

---

site_id	AD5
Number of Residues	5
Details	binding site for residue ACT A 415

Chain	Residue
A	PHE164
A	ARG174
A	TRP176
A	VAL262
A	LEU268

---

site_id	AD6
Number of Residues	3
Details	binding site for residue ACT A 416

Chain	Residue
A	PHE150
A	PRO151
A	SER152

---

site_id	AD7
Number of Residues	2
Details	binding site for residue ACT A 417

Chain	Residue
A	GLU292
A	HOH501

---

site_id	AD8
Number of Residues	6
Details	binding site for residue ACT A 418

Chain	Residue
A	PRO154
A	THR155
A	GLY156
A	LYS211
A	HOH505
A	HOH507

---

site_id	AD9
Number of Residues	3
Details	binding site for residue CL A 419

Chain	Residue
A	GLY199
A	PHE202
A	TYR213

---

site_id	AE1
Number of Residues	5
Details	binding site for residue CL A 420

Chain	Residue
A	PHE16
A	ASP17
A	ILE29
A	HOH693
A	HOH723

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