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5YIR

Crystal Structure of AnkB LIR/GABARAP complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000139cellular_componentGolgi membrane
A0000226biological_processmicrotubule cytoskeleton organization
A0000421cellular_componentautophagosome membrane
A0000422biological_processautophagy of mitochondrion
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005764cellular_componentlysosome
A0005776cellular_componentautophagosome
A0005790cellular_componentsmooth endoplasmic reticulum
A0005794cellular_componentGolgi apparatus
A0005856cellular_componentcytoskeleton
A0005874cellular_componentmicrotubule
A0005875cellular_componentmicrotubule associated complex
A0005886cellular_componentplasma membrane
A0005930cellular_componentaxoneme
A0006914biological_processautophagy
A0006915biological_processapoptotic process
A0006995biological_processcellular response to nitrogen starvation
A0008017molecular_functionmicrotubule binding
A0008429molecular_functionphosphatidylethanolamine binding
A0008625biological_processextrinsic apoptotic signaling pathway via death domain receptors
A0012505cellular_componentendomembrane system
A0015031biological_processprotein transport
A0015629cellular_componentactin cytoskeleton
A0016020cellular_componentmembrane
A0031410cellular_componentcytoplasmic vesicle
A0031625molecular_functionubiquitin protein ligase binding
A0032436biological_processpositive regulation of proteasomal ubiquitin-dependent protein catabolic process
A0035020biological_processregulation of Rac protein signal transduction
A0044297cellular_componentcell body
A0048471cellular_componentperinuclear region of cytoplasm
A0048487molecular_functionbeta-tubulin binding
A0050811molecular_functionGABA receptor binding
A0097225cellular_componentsperm midpiece
A0097352biological_processautophagosome maturation
A0098696biological_processregulation of neurotransmitter receptor localization to postsynaptic specialization membrane
A0098982cellular_componentGABA-ergic synapse
A1902524biological_processpositive regulation of protein K48-linked ubiquitination
B0000045biological_processautophagosome assembly
B0000139cellular_componentGolgi membrane
B0000226biological_processmicrotubule cytoskeleton organization
B0000421cellular_componentautophagosome membrane
B0000422biological_processautophagy of mitochondrion
B0005515molecular_functionprotein binding
B0005737cellular_componentcytoplasm
B0005764cellular_componentlysosome
B0005776cellular_componentautophagosome
B0005790cellular_componentsmooth endoplasmic reticulum
B0005794cellular_componentGolgi apparatus
B0005856cellular_componentcytoskeleton
B0005874cellular_componentmicrotubule
B0005875cellular_componentmicrotubule associated complex
B0005886cellular_componentplasma membrane
B0005930cellular_componentaxoneme
B0006914biological_processautophagy
B0006915biological_processapoptotic process
B0006995biological_processcellular response to nitrogen starvation
B0008017molecular_functionmicrotubule binding
B0008429molecular_functionphosphatidylethanolamine binding
B0008625biological_processextrinsic apoptotic signaling pathway via death domain receptors
B0012505cellular_componentendomembrane system
B0015031biological_processprotein transport
B0015629cellular_componentactin cytoskeleton
B0016020cellular_componentmembrane
B0031410cellular_componentcytoplasmic vesicle
B0031625molecular_functionubiquitin protein ligase binding
B0032436biological_processpositive regulation of proteasomal ubiquitin-dependent protein catabolic process
B0035020biological_processregulation of Rac protein signal transduction
B0044297cellular_componentcell body
B0048471cellular_componentperinuclear region of cytoplasm
B0048487molecular_functionbeta-tubulin binding
B0050811molecular_functionGABA receptor binding
B0097225cellular_componentsperm midpiece
B0097352biological_processautophagosome maturation
B0098696biological_processregulation of neurotransmitter receptor localization to postsynaptic specialization membrane
B0098982cellular_componentGABA-ergic synapse
B1902524biological_processpositive regulation of protein K48-linked ubiquitination
D0000045biological_processautophagosome assembly
D0000139cellular_componentGolgi membrane
D0000226biological_processmicrotubule cytoskeleton organization
D0000421cellular_componentautophagosome membrane
D0000422biological_processautophagy of mitochondrion
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005764cellular_componentlysosome
D0005776cellular_componentautophagosome
D0005790cellular_componentsmooth endoplasmic reticulum
D0005794cellular_componentGolgi apparatus
D0005856cellular_componentcytoskeleton
D0005874cellular_componentmicrotubule
D0005875cellular_componentmicrotubule associated complex
D0005886cellular_componentplasma membrane
D0005930cellular_componentaxoneme
D0006914biological_processautophagy
D0006915biological_processapoptotic process
D0006995biological_processcellular response to nitrogen starvation
D0008017molecular_functionmicrotubule binding
D0008429molecular_functionphosphatidylethanolamine binding
D0008625biological_processextrinsic apoptotic signaling pathway via death domain receptors
D0012505cellular_componentendomembrane system
D0015031biological_processprotein transport
D0015629cellular_componentactin cytoskeleton
D0016020cellular_componentmembrane
D0031410cellular_componentcytoplasmic vesicle
D0031625molecular_functionubiquitin protein ligase binding
D0032436biological_processpositive regulation of proteasomal ubiquitin-dependent protein catabolic process
D0035020biological_processregulation of Rac protein signal transduction
D0044297cellular_componentcell body
D0048471cellular_componentperinuclear region of cytoplasm
D0048487molecular_functionbeta-tubulin binding
D0050811molecular_functionGABA receptor binding
D0097225cellular_componentsperm midpiece
D0097352biological_processautophagosome maturation
D0098696biological_processregulation of neurotransmitter receptor localization to postsynaptic specialization membrane
D0098982cellular_componentGABA-ergic synapse
D1902524biological_processpositive regulation of protein K48-linked ubiquitination
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue NI D 201
ChainResidue
DHIS99
DGLU112
DHOH303
DHOH304

site_idAC2
Number of Residues2
Detailsbinding site for residue NI D 202
ChainResidue
DGLU97
DHIS98

site_idAC3
Number of Residues4
Detailsbinding site for residue NI D 203
ChainResidue
GHOH2103
CHOH2101
DHIS9
GGLU1995

site_idAC4
Number of Residues4
Detailsbinding site for residue NI A 201
ChainResidue
AHIS99
AGLU112
AHOH301
AHOH303

site_idAC5
Number of Residues4
Detailsbinding site for residue NI A 202
ChainResidue
AHIS69
AHOH304
BHIS69
BHOH301

site_idAC6
Number of Residues4
Detailsbinding site for residue NI A 203
ChainResidue
AHIS9
AHOH305
GGLU1987
GHOH2101

site_idAC7
Number of Residues1
Detailsbinding site for residue NI A 204
ChainResidue
AHIS98

site_idAC8
Number of Residues5
Detailsbinding site for residue NI B 201
ChainResidue
BHIS9
DHIS69
DHOH307
HGLU1987
HHOH2101

site_idAC9
Number of Residues4
Detailsbinding site for residue NI B 202
ChainResidue
BHIS99
BGLU112
BHOH303
BHOH304

site_idAD1
Number of Residues2
Detailsbinding site for residue NI B 203
ChainResidue
BGLU97
BHIS98

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q8C8R3
ChainResidueDetails
CSER1993
GSER1993
HSER1993
AARG28
BGLU17
BARG28

site_idSWS_FT_FI2
Number of Residues3
DetailsSITE: Cleavage; by ATG4B => ECO:0000269|PubMed:14530254
ChainResidueDetails
DGLY116
AGLY116
BGLY116

site_idSWS_FT_FI3
Number of Residues3
DetailsLIPID: Phosphatidylserine amidated glycine; alternate => ECO:0000250|UniProtKB:O95166
ChainResidueDetails
DGLY116
AGLY116
BGLY116

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PDB entries from 2024-07-24

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