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5YGY

Crystal Structure of BACE1 in complex with (S)-N-(3-(2-amino-6-(fluoromethyl)-4 -methyl-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-cyanopicolinamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues1
Detailsbinding site for residue IOD A 501
ChainResidue
ASER105

site_idAC2
Number of Residues2
Detailsbinding site for residue IOD A 502
ChainResidue
AARG349
AHOH726

site_idAC3
Number of Residues1
Detailsbinding site for residue IOD A 503
ChainResidue
ALYS107

site_idAC4
Number of Residues1
Detailsbinding site for residue IOD A 504
ChainResidue
AARG96

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 506
ChainResidue
AGOL507
AHOH626
AARG50
ATYR51
AGLN53
ASER187

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 507
ChainResidue
AHIS45
ALEU48
ATYR51
ATRP189
APRO373
AGOL506

site_idAC7
Number of Residues5
Detailsbinding site for residue GOL A 508
ChainResidue
ASER10
AGLY11
ATHR232
AARG307
APRO308

site_idAC8
Number of Residues16
Detailsbinding site for residue 0B6 A 509
ChainResidue
AGLY11
AGLN12
AGLY13
ALEU30
AASP32
AGLY34
ATYR71
APHE108
AASP228
ASER229
AGLY230
ATHR231
ATHR232
AALA335
AHOH744
AHOH749

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ILVDTGSSNFAV
ChainResidueDetails
AILE29-VAL40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10094","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues7
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17425515","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19011241","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

248636

PDB entries from 2026-02-04

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