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5YGX

Structure of BACE1 in complex with N-(3-((4R,5R,6S)-2-amino-6-(1,1-difluoroethyl)-5-fluoro-4-methyl-5,6-dihydro-4H-1,3-oxazin-4-yl)-4-fluorophenyl)-5-(fluoromethoxy)pyrazine-2-carboxamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004190molecular_functionaspartic-type endopeptidase activity
A0006508biological_processproteolysis
A0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue IOD A 501
ChainResidue
AGLU104
ASER105
AVAL291
AHOH650
AHOH801

site_idAC2
Number of Residues1
Detailsbinding site for residue IOD A 502
ChainResidue
ALYS107

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 503
ChainResidue
ASER187
AHOH630
AHOH676
AARG50
ATYR51
AGLN53

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL A 504
ChainResidue
AGLY34
ASER35
AVAL69
ATYR71
AARG128
ATYR198
A0B5509

site_idAC5
Number of Residues5
Detailsbinding site for residue GOL A 505
ChainResidue
ASER86
AILE87
APRO88
APRO91
AASN92

site_idAC6
Number of Residues6
Detailsbinding site for residue GOL A 506
ChainResidue
ALEU56
AHIS181
ATYR184
ATHR185
AGLY186
AHOH735

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL A 507
ChainResidue
AGLY-3
AARG54
ASER57
ATYR60

site_idAC8
Number of Residues2
Detailsbinding site for residue DMS A 508
ChainResidue
AARG96
AGLU134

site_idAC9
Number of Residues16
Detailsbinding site for residue 0B5 A 509
ChainResidue
AGLY11
AGLN12
AGLY13
ALEU30
AASP32
ATYR71
APHE108
AILE110
AASP228
ASER229
AGLY230
ATHR232
AALA335
AGOL504
AHOH739
AHOH766

Functional Information from PROSITE/UniProt
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. ILVDTGSSNFAV
ChainResidueDetails
AILE29-VAL40

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsActive site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU10094","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues7
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17425515","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19011241","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

250359

PDB entries from 2026-03-11

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