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5YGR

Crystal structure of PLP bound Diaminopropionate ammonia lyase from Salmonella typhimurium

Functional Information from GO Data
ChainGOidnamespacecontents
A0008838molecular_functiondiaminopropionate ammonia-lyase activity
A0016829molecular_functionlyase activity
A0030170molecular_functionpyridoxal phosphate binding
B0008838molecular_functiondiaminopropionate ammonia-lyase activity
B0016829molecular_functionlyase activity
B0030170molecular_functionpyridoxal phosphate binding
C0008838molecular_functiondiaminopropionate ammonia-lyase activity
C0016829molecular_functionlyase activity
C0030170molecular_functionpyridoxal phosphate binding
D0008838molecular_functiondiaminopropionate ammonia-lyase activity
D0016829molecular_functionlyase activity
D0030170molecular_functionpyridoxal phosphate binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue EDO A 501
ChainResidue
AHIS284
ACYS285
AHOH633

site_idAC2
Number of Residues1
Detailsbinding site for residue EDO A 502
ChainResidue
ATHR18

site_idAC3
Number of Residues4
Detailsbinding site for residue PEG A 503
ChainResidue
ALYS327
AGLU358
AASN362
BASN400

site_idAC4
Number of Residues9
Detailsbinding site for residue PO4 A 504
ChainResidue
ATHR124
AASP125
AGLY126
AASN127
AHIS128
AASP194
AGLY296
AHOH611
ALLP78

site_idAC5
Number of Residues4
Detailsbinding site for residue PO4 A 505
ChainResidue
AHIS49
AASN50
ATHR341
AHOH620

site_idAC6
Number of Residues4
Detailsbinding site for residue EDO B 501
ChainResidue
BHIS49
BASN50
BTHR341
BPEG506

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO B 502
ChainResidue
BASN50
BALA52
BHIS53
BASP340
BPEG506

site_idAC8
Number of Residues1
Detailsbinding site for residue EDO B 503
ChainResidue
BALA404

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO B 504
ChainResidue
BGLN268
BHOH616

site_idAD1
Number of Residues3
Detailsbinding site for residue PEG B 505
ChainResidue
BSER275
BGLY300
BPRO302

site_idAD2
Number of Residues5
Detailsbinding site for residue PEG B 506
ChainResidue
BTHR339
BTHR341
BEDO501
BEDO502
BHOH669

site_idAD3
Number of Residues2
Detailsbinding site for residue PO4 B 507
ChainResidue
BSER275
BTRP307

site_idAD4
Number of Residues8
Detailsbinding site for residue PO4 B 508
ChainResidue
BLLP78
BTHR124
BASP125
BASN127
BHIS128
BHOH601
BHOH606
BHOH629

site_idAD5
Number of Residues8
Detailsbinding site for residue PO4 C 501
ChainResidue
CLLP78
CTHR124
CASP125
CGLY126
CASN127
CHIS128
CASP194
CGLY296

site_idAD6
Number of Residues5
Detailsbinding site for residue PO4 C 502
ChainResidue
CHIS49
CASN50
CTHR341
CHOH611
CHOH634

site_idAD7
Number of Residues2
Detailsbinding site for residue EDO D 501
ChainResidue
DTRP189
DLEU191

site_idAD8
Number of Residues5
Detailsbinding site for residue EDO D 502
ChainResidue
CCYS285
DLYS93
DHOH622
DHOH631
DHOH702

site_idAD9
Number of Residues10
Detailsbinding site for residue PO4 D 503
ChainResidue
DLLP78
DTHR124
DASP125
DASN127
DHIS128
DASP194
DGLY296
DHOH607
DHOH624
DHOH663

site_idAE1
Number of Residues5
Detailsbinding site for residue PO4 D 504
ChainResidue
DLEU48
DHIS49
DASN50
DTHR341
DHOH681

site_idAE2
Number of Residues2
Detailsbinding site for residue PO4 D 505
ChainResidue
DGLN56
DHOH641

site_idAE3
Number of Residues20
Detailsbinding site for Di-peptide PHE C 77 and LLP C 78
ChainResidue
CSER241
CPHE242
CLEU297
CSER348
CGLY349
CTHR385
CPO4501
CHOH602
CHOH615
CGLU68
CALA76
CGLY79
CLEU80
CGLY81
CGLY82
CASN127
CTYR211
CGLY238
CVAL239
CGLY240

site_idAE4
Number of Residues20
Detailsbinding site for Di-peptide LLP C 78 and GLY C 79
ChainResidue
CALA76
CPHE77
CLEU80
CGLY81
CGLY82
CSER83
CASN127
CTYR211
CGLY238
CVAL239
CGLY240
CSER241
CPHE242
CLEU297
CSER348
CGLY349
CTHR385
CPO4501
CHOH602
CHOH615

site_idAE5
Number of Residues19
Detailsbinding site for Di-peptide PHE D 77 and LLP D 78
ChainResidue
DGLU68
DALA76
DGLY79
DLEU80
DASN127
DHIS128
DTYR211
DLEU214
DGLY238
DVAL239
DGLY240
DSER241
DPHE242
DLEU297
DSER348
DTHR385
DGLU386
DPO4503
DHOH610

site_idAE6
Number of Residues20
Detailsbinding site for Di-peptide LLP D 78 and GLY D 79
ChainResidue
DALA76
DPHE77
DLEU80
DGLY81
DGLY82
DSER83
DASN127
DHIS128
DTYR211
DGLY238
DVAL239
DGLY240
DSER241
DPHE242
DLEU297
DSER348
DTHR385
DGLU386
DPO4503
DHOH610

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255
ChainResidueDetails
BLLP78
CLLP78
DLLP78

219869

PDB entries from 2024-05-15

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