5YGK
Crystal structure of a synthase from Streptomyces sp. CL190 with dmaspp
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0016094 | biological_process | polyprenol biosynthetic process |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| A | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0016094 | biological_process | polyprenol biosynthetic process |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| B | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| B | 0046872 | molecular_function | metal ion binding |
| C | 0016094 | biological_process | polyprenol biosynthetic process |
| C | 0016740 | molecular_function | transferase activity |
| C | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| C | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0016094 | biological_process | polyprenol biosynthetic process |
| D | 0016740 | molecular_function | transferase activity |
| D | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| D | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0016094 | biological_process | polyprenol biosynthetic process |
| E | 0016740 | molecular_function | transferase activity |
| E | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| E | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0016094 | biological_process | polyprenol biosynthetic process |
| F | 0016740 | molecular_function | transferase activity |
| F | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| F | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| F | 0046872 | molecular_function | metal ion binding |
| G | 0016094 | biological_process | polyprenol biosynthetic process |
| G | 0016740 | molecular_function | transferase activity |
| G | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| G | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| G | 0046872 | molecular_function | metal ion binding |
| H | 0016094 | biological_process | polyprenol biosynthetic process |
| H | 0016740 | molecular_function | transferase activity |
| H | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| H | 0045547 | molecular_function | ditrans,polycis-polyprenyl diphosphate synthase [(2E,6E)-farnesyl diphosphate specific] activity |
| H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 12 |
| Details | binding site for residue DST A 301 |
| Chain | Residue |
| A | LEU7 |
| A | MG303 |
| A | HOH423 |
| A | HOH460 |
| A | PRO8 |
| A | ASP9 |
| A | THR51 |
| A | ARG163 |
| A | ARG169 |
| A | SER171 |
| A | PHE173 |
| A | DST302 |
| site_id | AC2 |
| Number of Residues | 12 |
| Details | binding site for residue DST A 302 |
| Chain | Residue |
| A | PRO8 |
| A | ASP9 |
| A | GLY10 |
| A | MET11 |
| A | ARG12 |
| A | ARG13 |
| A | ALA52 |
| A | PHE72 |
| A | DST301 |
| A | MG303 |
| A | HOH423 |
| A | HOH460 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 303 |
| Chain | Residue |
| A | ASP9 |
| A | DST301 |
| A | DST302 |
| A | HOH423 |
| A | HOH460 |
| site_id | AC4 |
| Number of Residues | 11 |
| Details | binding site for residue DST B 301 |
| Chain | Residue |
| B | PRO8 |
| B | ASP9 |
| B | THR51 |
| B | ASN57 |
| B | ARG163 |
| B | ARG169 |
| B | SER171 |
| B | PHE173 |
| B | DST302 |
| B | MG303 |
| F | TYR180 |
| site_id | AC5 |
| Number of Residues | 10 |
| Details | binding site for residue DST B 302 |
| Chain | Residue |
| B | PRO8 |
| B | ASP9 |
| B | GLY10 |
| B | MET11 |
| B | ARG12 |
| B | ARG13 |
| B | TYR26 |
| B | ALA52 |
| B | DST301 |
| B | MG303 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue MG B 303 |
| Chain | Residue |
| B | ASP9 |
| B | DST301 |
| B | DST302 |
| site_id | AC7 |
| Number of Residues | 18 |
| Details | binding site for residue DST C 301 |
| Chain | Residue |
| C | LEU7 |
| C | PRO8 |
| C | ASP9 |
| C | THR51 |
| C | ALA52 |
| C | ASN57 |
| C | ARG163 |
| C | ARG169 |
| C | SER171 |
| C | PHE173 |
| C | DST302 |
| C | MG303 |
| C | HOH404 |
| C | HOH426 |
| H | TYR180 |
| H | ARG211 |
| H | PHE212 |
| H | GLY213 |
| site_id | AC8 |
| Number of Residues | 14 |
| Details | binding site for residue DST C 302 |
| Chain | Residue |
| C | PRO8 |
| C | ASP9 |
| C | GLY10 |
| C | MET11 |
| C | ARG12 |
| C | ARG13 |
| C | TYR26 |
| C | ALA52 |
| C | ARG60 |
| C | PHE72 |
| C | DST301 |
| C | MG303 |
| C | HOH404 |
| C | HOH426 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue MG C 303 |
| Chain | Residue |
| C | ASP9 |
| C | DST301 |
| C | DST302 |
| C | HOH404 |
| C | HOH426 |
| site_id | AD1 |
| Number of Residues | 13 |
| Details | binding site for residue DST D 301 |
| Chain | Residue |
| D | DST302 |
| D | MG303 |
| D | HOH411 |
| G | TYR180 |
| D | PRO8 |
| D | ASP9 |
| D | THR51 |
| D | ALA52 |
| D | SER53 |
| D | ARG163 |
| D | ARG169 |
| D | SER171 |
| D | PHE173 |
| site_id | AD2 |
| Number of Residues | 14 |
| Details | binding site for residue DST D 302 |
| Chain | Residue |
| D | PRO8 |
| D | ASP9 |
| D | GLY10 |
| D | MET11 |
| D | ARG12 |
| D | ARG13 |
| D | TYR26 |
| D | ALA52 |
| D | ASN57 |
| D | PHE68 |
| D | DST301 |
| D | MG303 |
| D | HOH411 |
| D | HOH421 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue MG D 303 |
| Chain | Residue |
| D | ASP9 |
| D | DST301 |
| D | DST302 |
| D | HOH411 |
| D | HOH421 |
| site_id | AD4 |
| Number of Residues | 14 |
| Details | binding site for residue DST E 301 |
| Chain | Residue |
| E | LEU7 |
| E | PRO8 |
| E | ASP9 |
| E | THR51 |
| E | ASN57 |
| E | ARG163 |
| E | ARG169 |
| E | SER171 |
| E | PHE173 |
| E | DST302 |
| E | MG303 |
| E | HOH407 |
| E | HOH424 |
| E | HOH455 |
| site_id | AD5 |
| Number of Residues | 12 |
| Details | binding site for residue DST E 302 |
| Chain | Residue |
| E | PRO8 |
| E | ASP9 |
| E | GLY10 |
| E | MET11 |
| E | ARG12 |
| E | ARG13 |
| E | TYR26 |
| E | ALA52 |
| E | ARG60 |
| E | DST301 |
| E | MG303 |
| E | HOH455 |
| site_id | AD6 |
| Number of Residues | 4 |
| Details | binding site for residue MG E 303 |
| Chain | Residue |
| E | ASP9 |
| E | DST301 |
| E | DST302 |
| E | HOH455 |
| site_id | AD7 |
| Number of Residues | 13 |
| Details | binding site for residue DST F 301 |
| Chain | Residue |
| F | LEU7 |
| F | PRO8 |
| F | ASP9 |
| F | THR51 |
| F | ASN57 |
| F | ARG163 |
| F | ARG169 |
| F | SER171 |
| F | PHE173 |
| F | DST302 |
| F | MG303 |
| F | HOH401 |
| F | HOH402 |
| site_id | AD8 |
| Number of Residues | 13 |
| Details | binding site for residue DST F 302 |
| Chain | Residue |
| F | PRO8 |
| F | ASP9 |
| F | GLY10 |
| F | MET11 |
| F | ARG12 |
| F | ARG13 |
| F | TYR26 |
| F | ALA52 |
| F | ASN57 |
| F | ARG60 |
| F | PHE68 |
| F | DST301 |
| F | MG303 |
| site_id | AD9 |
| Number of Residues | 5 |
| Details | binding site for residue MG F 303 |
| Chain | Residue |
| F | ASP9 |
| F | DST301 |
| F | DST302 |
| F | HOH402 |
| F | HOH431 |
| site_id | AE1 |
| Number of Residues | 13 |
| Details | binding site for residue DST G 301 |
| Chain | Residue |
| G | LEU7 |
| G | PRO8 |
| G | ASP9 |
| G | THR51 |
| G | ARG163 |
| G | ARG169 |
| G | SER171 |
| G | PHE173 |
| G | DST302 |
| G | MG303 |
| G | HOH401 |
| G | HOH403 |
| G | HOH409 |
| site_id | AE2 |
| Number of Residues | 11 |
| Details | binding site for residue DST G 302 |
| Chain | Residue |
| G | PRO8 |
| G | ASP9 |
| G | GLY10 |
| G | MET11 |
| G | ARG12 |
| G | ARG13 |
| G | TYR26 |
| G | ARG60 |
| G | DST301 |
| G | MG303 |
| G | HOH409 |
| site_id | AE3 |
| Number of Residues | 4 |
| Details | binding site for residue MG G 303 |
| Chain | Residue |
| G | ASP9 |
| G | DST301 |
| G | DST302 |
| G | HOH409 |
| site_id | AE4 |
| Number of Residues | 15 |
| Details | binding site for residue DST H 301 |
| Chain | Residue |
| C | TYR180 |
| H | LEU7 |
| H | PRO8 |
| H | ASP9 |
| H | THR51 |
| H | ASN57 |
| H | ARG163 |
| H | ARG169 |
| H | SER171 |
| H | PHE173 |
| H | DST302 |
| H | MG303 |
| H | HOH407 |
| H | HOH452 |
| H | HOH477 |
| site_id | AE5 |
| Number of Residues | 12 |
| Details | binding site for residue DST H 302 |
| Chain | Residue |
| H | PRO8 |
| H | ASP9 |
| H | GLY10 |
| H | MET11 |
| H | ARG12 |
| H | ARG13 |
| H | TYR26 |
| H | ALA52 |
| H | ASN57 |
| H | ARG60 |
| H | DST301 |
| H | MG303 |
| site_id | AE6 |
| Number of Residues | 3 |
| Details | binding site for residue MG H 303 |
| Chain | Residue |
| H | ASP9 |
| H | DST301 |
| H | DST302 |
