5YGK
Crystal structure of a synthase from Streptomyces sp. CL190 with dmaspp
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0002094 | molecular_function | polyprenyltransferase activity |
A | 0016094 | biological_process | polyprenol biosynthetic process |
A | 0016740 | molecular_function | transferase activity |
A | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
A | 0046872 | molecular_function | metal ion binding |
B | 0002094 | molecular_function | polyprenyltransferase activity |
B | 0016094 | biological_process | polyprenol biosynthetic process |
B | 0016740 | molecular_function | transferase activity |
B | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
B | 0046872 | molecular_function | metal ion binding |
C | 0002094 | molecular_function | polyprenyltransferase activity |
C | 0016094 | biological_process | polyprenol biosynthetic process |
C | 0016740 | molecular_function | transferase activity |
C | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
C | 0046872 | molecular_function | metal ion binding |
D | 0002094 | molecular_function | polyprenyltransferase activity |
D | 0016094 | biological_process | polyprenol biosynthetic process |
D | 0016740 | molecular_function | transferase activity |
D | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
D | 0046872 | molecular_function | metal ion binding |
E | 0002094 | molecular_function | polyprenyltransferase activity |
E | 0016094 | biological_process | polyprenol biosynthetic process |
E | 0016740 | molecular_function | transferase activity |
E | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
E | 0046872 | molecular_function | metal ion binding |
F | 0002094 | molecular_function | polyprenyltransferase activity |
F | 0016094 | biological_process | polyprenol biosynthetic process |
F | 0016740 | molecular_function | transferase activity |
F | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
F | 0046872 | molecular_function | metal ion binding |
G | 0002094 | molecular_function | polyprenyltransferase activity |
G | 0016094 | biological_process | polyprenol biosynthetic process |
G | 0016740 | molecular_function | transferase activity |
G | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
G | 0046872 | molecular_function | metal ion binding |
H | 0002094 | molecular_function | polyprenyltransferase activity |
H | 0016094 | biological_process | polyprenol biosynthetic process |
H | 0016740 | molecular_function | transferase activity |
H | 0016765 | molecular_function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
H | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 12 |
Details | binding site for residue DST A 301 |
Chain | Residue |
A | LEU7 |
A | MG303 |
A | HOH423 |
A | HOH460 |
A | PRO8 |
A | ASP9 |
A | THR51 |
A | ARG163 |
A | ARG169 |
A | SER171 |
A | PHE173 |
A | DST302 |
site_id | AC2 |
Number of Residues | 12 |
Details | binding site for residue DST A 302 |
Chain | Residue |
A | PRO8 |
A | ASP9 |
A | GLY10 |
A | MET11 |
A | ARG12 |
A | ARG13 |
A | ALA52 |
A | PHE72 |
A | DST301 |
A | MG303 |
A | HOH423 |
A | HOH460 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 303 |
Chain | Residue |
A | ASP9 |
A | DST301 |
A | DST302 |
A | HOH423 |
A | HOH460 |
site_id | AC4 |
Number of Residues | 11 |
Details | binding site for residue DST B 301 |
Chain | Residue |
B | PRO8 |
B | ASP9 |
B | THR51 |
B | ASN57 |
B | ARG163 |
B | ARG169 |
B | SER171 |
B | PHE173 |
B | DST302 |
B | MG303 |
F | TYR180 |
site_id | AC5 |
Number of Residues | 10 |
Details | binding site for residue DST B 302 |
Chain | Residue |
B | PRO8 |
B | ASP9 |
B | GLY10 |
B | MET11 |
B | ARG12 |
B | ARG13 |
B | TYR26 |
B | ALA52 |
B | DST301 |
B | MG303 |
site_id | AC6 |
Number of Residues | 3 |
Details | binding site for residue MG B 303 |
Chain | Residue |
B | ASP9 |
B | DST301 |
B | DST302 |
site_id | AC7 |
Number of Residues | 18 |
Details | binding site for residue DST C 301 |
Chain | Residue |
C | LEU7 |
C | PRO8 |
C | ASP9 |
C | THR51 |
C | ALA52 |
C | ASN57 |
C | ARG163 |
C | ARG169 |
C | SER171 |
C | PHE173 |
C | DST302 |
C | MG303 |
C | HOH404 |
C | HOH426 |
H | TYR180 |
H | ARG211 |
H | PHE212 |
H | GLY213 |
site_id | AC8 |
Number of Residues | 14 |
Details | binding site for residue DST C 302 |
Chain | Residue |
C | PRO8 |
C | ASP9 |
C | GLY10 |
C | MET11 |
C | ARG12 |
C | ARG13 |
C | TYR26 |
C | ALA52 |
C | ARG60 |
C | PHE72 |
C | DST301 |
C | MG303 |
C | HOH404 |
C | HOH426 |
site_id | AC9 |
Number of Residues | 5 |
Details | binding site for residue MG C 303 |
Chain | Residue |
C | ASP9 |
C | DST301 |
C | DST302 |
C | HOH404 |
C | HOH426 |
site_id | AD1 |
Number of Residues | 13 |
Details | binding site for residue DST D 301 |
Chain | Residue |
D | DST302 |
D | MG303 |
D | HOH411 |
G | TYR180 |
D | PRO8 |
D | ASP9 |
D | THR51 |
D | ALA52 |
D | SER53 |
D | ARG163 |
D | ARG169 |
D | SER171 |
D | PHE173 |
site_id | AD2 |
Number of Residues | 14 |
Details | binding site for residue DST D 302 |
Chain | Residue |
D | PRO8 |
D | ASP9 |
D | GLY10 |
D | MET11 |
D | ARG12 |
D | ARG13 |
D | TYR26 |
D | ALA52 |
D | ASN57 |
D | PHE68 |
D | DST301 |
D | MG303 |
D | HOH411 |
D | HOH421 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue MG D 303 |
Chain | Residue |
D | ASP9 |
D | DST301 |
D | DST302 |
D | HOH411 |
D | HOH421 |
site_id | AD4 |
Number of Residues | 14 |
Details | binding site for residue DST E 301 |
Chain | Residue |
E | LEU7 |
E | PRO8 |
E | ASP9 |
E | THR51 |
E | ASN57 |
E | ARG163 |
E | ARG169 |
E | SER171 |
E | PHE173 |
E | DST302 |
E | MG303 |
E | HOH407 |
E | HOH424 |
E | HOH455 |
site_id | AD5 |
Number of Residues | 12 |
Details | binding site for residue DST E 302 |
Chain | Residue |
E | PRO8 |
E | ASP9 |
E | GLY10 |
E | MET11 |
E | ARG12 |
E | ARG13 |
E | TYR26 |
E | ALA52 |
E | ARG60 |
E | DST301 |
E | MG303 |
E | HOH455 |
site_id | AD6 |
Number of Residues | 4 |
Details | binding site for residue MG E 303 |
Chain | Residue |
E | ASP9 |
E | DST301 |
E | DST302 |
E | HOH455 |
site_id | AD7 |
Number of Residues | 13 |
Details | binding site for residue DST F 301 |
Chain | Residue |
F | LEU7 |
F | PRO8 |
F | ASP9 |
F | THR51 |
F | ASN57 |
F | ARG163 |
F | ARG169 |
F | SER171 |
F | PHE173 |
F | DST302 |
F | MG303 |
F | HOH401 |
F | HOH402 |
site_id | AD8 |
Number of Residues | 13 |
Details | binding site for residue DST F 302 |
Chain | Residue |
F | PRO8 |
F | ASP9 |
F | GLY10 |
F | MET11 |
F | ARG12 |
F | ARG13 |
F | TYR26 |
F | ALA52 |
F | ASN57 |
F | ARG60 |
F | PHE68 |
F | DST301 |
F | MG303 |
site_id | AD9 |
Number of Residues | 5 |
Details | binding site for residue MG F 303 |
Chain | Residue |
F | ASP9 |
F | DST301 |
F | DST302 |
F | HOH402 |
F | HOH431 |
site_id | AE1 |
Number of Residues | 13 |
Details | binding site for residue DST G 301 |
Chain | Residue |
G | LEU7 |
G | PRO8 |
G | ASP9 |
G | THR51 |
G | ARG163 |
G | ARG169 |
G | SER171 |
G | PHE173 |
G | DST302 |
G | MG303 |
G | HOH401 |
G | HOH403 |
G | HOH409 |
site_id | AE2 |
Number of Residues | 11 |
Details | binding site for residue DST G 302 |
Chain | Residue |
G | PRO8 |
G | ASP9 |
G | GLY10 |
G | MET11 |
G | ARG12 |
G | ARG13 |
G | TYR26 |
G | ARG60 |
G | DST301 |
G | MG303 |
G | HOH409 |
site_id | AE3 |
Number of Residues | 4 |
Details | binding site for residue MG G 303 |
Chain | Residue |
G | ASP9 |
G | DST301 |
G | DST302 |
G | HOH409 |
site_id | AE4 |
Number of Residues | 15 |
Details | binding site for residue DST H 301 |
Chain | Residue |
C | TYR180 |
H | LEU7 |
H | PRO8 |
H | ASP9 |
H | THR51 |
H | ASN57 |
H | ARG163 |
H | ARG169 |
H | SER171 |
H | PHE173 |
H | DST302 |
H | MG303 |
H | HOH407 |
H | HOH452 |
H | HOH477 |
site_id | AE5 |
Number of Residues | 12 |
Details | binding site for residue DST H 302 |
Chain | Residue |
H | PRO8 |
H | ASP9 |
H | GLY10 |
H | MET11 |
H | ARG12 |
H | ARG13 |
H | TYR26 |
H | ALA52 |
H | ASN57 |
H | ARG60 |
H | DST301 |
H | MG303 |
site_id | AE6 |
Number of Residues | 3 |
Details | binding site for residue MG H 303 |
Chain | Residue |
H | ASP9 |
H | DST301 |
H | DST302 |