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5YG2

Plasmodium vivax SHMT bound with PLP-glycine and GS705

Functional Information from GO Data
ChainGOidnamespacecontents
A0000900molecular_functionmRNA regulatory element binding translation repressor activity
A0004372molecular_functionglycine hydroxymethyltransferase activity
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006565biological_processL-serine catabolic process
A0008168molecular_functionmethyltransferase activity
A0008270molecular_functionzinc ion binding
A0009113biological_processpurine nucleobase biosynthetic process
A0017148biological_processnegative regulation of translation
A0019264biological_processglycine biosynthetic process from serine
A0030170molecular_functionpyridoxal phosphate binding
A0032259biological_processmethylation
A0035999biological_processtetrahydrofolate interconversion
A0042803molecular_functionprotein homodimerization activity
A0046655biological_processfolic acid metabolic process
A0048027molecular_functionmRNA 5'-UTR binding
A0050897molecular_functioncobalt ion binding
A0051289biological_processprotein homotetramerization
A0070905molecular_functionserine binding
A1990830biological_processcellular response to leukemia inhibitory factor
B0000900molecular_functionmRNA regulatory element binding translation repressor activity
B0004372molecular_functionglycine hydroxymethyltransferase activity
B0005634cellular_componentnucleus
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006565biological_processL-serine catabolic process
B0008168molecular_functionmethyltransferase activity
B0008270molecular_functionzinc ion binding
B0009113biological_processpurine nucleobase biosynthetic process
B0017148biological_processnegative regulation of translation
B0019264biological_processglycine biosynthetic process from serine
B0030170molecular_functionpyridoxal phosphate binding
B0032259biological_processmethylation
B0035999biological_processtetrahydrofolate interconversion
B0042803molecular_functionprotein homodimerization activity
B0046655biological_processfolic acid metabolic process
B0048027molecular_functionmRNA 5'-UTR binding
B0050897molecular_functioncobalt ion binding
B0051289biological_processprotein homotetramerization
B0070905molecular_functionserine binding
B1990830biological_processcellular response to leukemia inhibitory factor
C0000900molecular_functionmRNA regulatory element binding translation repressor activity
C0004372molecular_functionglycine hydroxymethyltransferase activity
C0005634cellular_componentnucleus
C0005737cellular_componentcytoplasm
C0005829cellular_componentcytosol
C0006565biological_processL-serine catabolic process
C0008168molecular_functionmethyltransferase activity
C0008270molecular_functionzinc ion binding
C0009113biological_processpurine nucleobase biosynthetic process
C0017148biological_processnegative regulation of translation
C0019264biological_processglycine biosynthetic process from serine
C0030170molecular_functionpyridoxal phosphate binding
C0032259biological_processmethylation
C0035999biological_processtetrahydrofolate interconversion
C0042803molecular_functionprotein homodimerization activity
C0046655biological_processfolic acid metabolic process
C0048027molecular_functionmRNA 5'-UTR binding
C0050897molecular_functioncobalt ion binding
C0051289biological_processprotein homotetramerization
C0070905molecular_functionserine binding
C1990830biological_processcellular response to leukemia inhibitory factor
Functional Information from PDB Data
site_idAC1
Number of Residues21
Detailsbinding site for residue PLG A 501
ChainResidue
ASER34
ATHR234
AHIS236
ALYS237
AARG371
AHOH610
AHOH676
BTYR54
BGLU56
BTYR64
BGLY271
ASER100
BGLY272
BHOH655
AGLY101
ASER102
AHIS129
ATYR182
ATHR183
AASP208
AHIS211

site_idAC2
Number of Residues17
Detailsbinding site for residue N05 A 502
ChainResidue
ALEU124
AGLY128
AHIS129
ATHR183
AASN354
ALYS355
AASN356
ATHR357
APRO367
AARG371
AHOH626
AHOH630
BGLU56
BTYR63
BTYR64
BPRO267
BHOH601

site_idAC3
Number of Residues4
Detailsbinding site for residue CL A 503
ChainResidue
AASN276
ALYS277
BASN276
BLYS277

site_idAC4
Number of Residues19
Detailsbinding site for residue PLG B 501
ChainResidue
ATYR54
ATYR64
AGLY272
AHOH637
BSER34
BSER100
BGLY101
BSER102
BHIS129
BTYR182
BTHR183
BASP208
BHIS211
BTHR234
BHIS236
BLYS237
BARG371
BHOH607
BHOH636

site_idAC5
Number of Residues17
Detailsbinding site for residue N05 B 502
ChainResidue
AGLU56
ATYR63
ATYR64
APRO267
AHOH602
BLEU124
BGLY128
BHIS129
BTHR183
BASN354
BLYS355
BASN356
BTHR357
BPRO367
BARG371
BHOH644
BHOH646

site_idAC6
Number of Residues21
Detailsbinding site for residue PLG C 501
ChainResidue
CSER34
CTYR54
CGLU56
CTYR64
CSER100
CGLY101
CSER102
CASN105
CHIS129
CTYR182
CTHR183
CASP208
CHIS211
CTHR234
CHIS236
CLYS237
CGLY271
CGLY272
CARG371
CHOH653
CHOH662

site_idAC7
Number of Residues17
Detailsbinding site for residue N05 C 502
ChainResidue
CGLU56
CTYR63
CTYR64
CLEU124
CGLY128
CHIS129
CVAL141
CTHR183
CPRO267
CASN354
CLYS355
CASN356
CTHR357
CPRO367
CARG371
CHOH601
CHOH639

site_idAC8
Number of Residues3
Detailsbinding site for residue CL C 503
ChainResidue
CASN276
CASN276
CLYS277

220472

PDB entries from 2024-05-29

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