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5YD5

Crystal structure of the scFv antibody 4B08 with epitope peptide (mutation N3A)

Functional Information from GO Data
ChainGOidnamespacecontents
A0002250biological_processadaptive immune response
A0002376biological_processimmune system process
A0003823molecular_functionantigen binding
A0005576cellular_componentextracellular region
A0005886cellular_componentplasma membrane
A0006955biological_processimmune response
A0019814cellular_componentimmunoglobulin complex
C0002250biological_processadaptive immune response
C0002376biological_processimmune system process
C0003823molecular_functionantigen binding
C0005576cellular_componentextracellular region
C0005886cellular_componentplasma membrane
C0006955biological_processimmune response
C0019814cellular_componentimmunoglobulin complex
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue SO4 A 301
ChainResidue
AARG15
AGLY122
AGLY123
CSER19
CSER86
CGLY127
CGLY128

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 302
ChainResidue
AGLY128
CARG15
CGLY122
CGLY123
ASER19
AGLY127

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 303
ChainResidue
ASER158
AARG219
ASER221
AHOH406
AHOH546
CARG172

site_idAC4
Number of Residues5
Detailsbinding site for residue SO4 A 304
ChainResidue
AGLY28
ATHR30
ALYS33
ATYR34
AHOH457

site_idAC5
Number of Residues2
Detailsbinding site for residue SO4 A 305
ChainResidue
ASER118
ASER119

site_idAC6
Number of Residues5
Detailsbinding site for residue SO4 C 301
ChainResidue
AARG172
BHOH103
CSER158
CARG219
CSER221

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 C 302
ChainResidue
CTYR29
CTHR30
CLYS33
CTYR34

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 C 303
ChainResidue
ATHR154
CSER118
CSER119

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: Sulfotyrosine => ECO:0000269|PubMed:21763489
ChainResidueDetails
BTYR4
DTYR4

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Sulfotyrosine => ECO:0000255
ChainResidueDetails
BTYR5
DTYR5

237992

PDB entries from 2025-06-25

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