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5Y34

Membrane-bound respiratory [NiFe]-hydrogenase from Hydrogenovibrio marinus in a ferricyanide-oxidized condition

Replaces:  3AYY
Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0008901molecular_functionferredoxin hydrogenase activity
A0016151molecular_functionnickel cation binding
A0016491molecular_functionoxidoreductase activity
A0046872molecular_functionmetal ion binding
B0008901molecular_functionferredoxin hydrogenase activity
B0009375cellular_componentferredoxin hydrogenase complex
B0051536molecular_functioniron-sulfur cluster binding
C0005886cellular_componentplasma membrane
C0008901molecular_functionferredoxin hydrogenase activity
C0016151molecular_functionnickel cation binding
C0016491molecular_functionoxidoreductase activity
C0046872molecular_functionmetal ion binding
D0008901molecular_functionferredoxin hydrogenase activity
D0009375cellular_componentferredoxin hydrogenase complex
D0051536molecular_functioniron-sulfur cluster binding
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue 3NI A 601
ChainResidue
ACYS76
ACYS79
ACYS590
ACYS593
AFCO602
AO603

site_idAC2
Number of Residues13
Detailsbinding site for residue FCO A 602
ChainResidue
AALA521
APRO522
AARG523
ALEU526
AVAL544
APRO545
ATHR546
ACYS593
A3NI601
AO603
ACYS79
ACYS82
AHIS83

site_idAC3
Number of Residues6
Detailsbinding site for residue O A 603
ChainResidue
ACYS79
AARG523
ACYS590
ACYS593
A3NI601
AFCO602

site_idAC4
Number of Residues6
Detailsbinding site for residue GOL A 604
ChainResidue
ALYS310
AGLN319
AASP482
AHOH816
AHOH925
AHOH1184

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL A 605
ChainResidue
AILE242
AASN243
AILE244
AASP245
AGLY246
ASER496
AHOH782
AHOH1336
BARG220

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 606
ChainResidue
AGLU57
ACYS542
AHIS596
AHOH729
AHOH746
AHOH752

site_idAC7
Number of Residues10
Detailsbinding site for residue SF3 B 301
ChainResidue
BCYS23
BTHR24
BCYS25
BCYS26
BGLU82
BSER120
BCYS121
BCYS126
BGLY157
BCYS158

site_idAC8
Number of Residues10
Detailsbinding site for residue F3S B 302
ChainResidue
ALYS227
BILE195
BTHR235
BASN237
BCYS239
BTRP244
BPRO251
BCYS258
BILE259
BCYS261

site_idAC9
Number of Residues6
Detailsbinding site for residue SF4 B 303
ChainResidue
BHIS196
BCYS199
BARG202
BCYS224
BLEU225
BCYS230

site_idAD1
Number of Residues6
Detailsbinding site for residue MG C 701
ChainResidue
CGLU57
CCYS542
CHIS596
CHOH817
CHOH829
CHOH831

site_idAD2
Number of Residues6
Detailsbinding site for residue 3NI C 702
ChainResidue
CCYS76
CCYS79
CCYS590
CCYS593
CFCO703
CO704

site_idAD3
Number of Residues13
Detailsbinding site for residue FCO C 703
ChainResidue
CCYS79
CCYS82
CHIS83
CALA521
CPRO522
CARG523
CLEU526
CVAL544
CPRO545
CTHR546
CCYS593
C3NI702
CO704

site_idAD4
Number of Residues6
Detailsbinding site for residue O C 704
ChainResidue
CCYS590
CCYS593
C3NI702
CFCO703
CCYS79
CARG523

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL C 705
ChainResidue
CLYS310
CGLN319
CASP482
CHOH917
CHOH1178

site_idAD6
Number of Residues9
Detailsbinding site for residue GOL C 706
ChainResidue
CILE242
CASN243
CILE244
CASP245
CGLY246
CSER496
CHOH812
CHOH1390
DARG220

site_idAD7
Number of Residues10
Detailsbinding site for residue SF3 D 301
ChainResidue
DCYS23
DTHR24
DCYS25
DCYS26
DGLU82
DSER120
DCYS121
DCYS126
DGLY157
DCYS158

site_idAD8
Number of Residues9
Detailsbinding site for residue F3S D 302
ChainResidue
CLYS227
DTHR235
DASN237
DCYS239
DTRP244
DPRO251
DCYS258
DILE259
DCYS261

site_idAD9
Number of Residues6
Detailsbinding site for residue SF4 D 303
ChainResidue
DHIS196
DCYS199
DARG202
DCYS224
DLEU225
DCYS230

Functional Information from PROSITE/UniProt
site_idPS00507
Number of Residues26
DetailsNI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGLEvilrgrdprdawafvERiCGVC
ChainResidueDetails
AARG54-CYS79

site_idPS00508
Number of Residues10
DetailsNI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCLACst.H
ChainResidueDetails
APHE587-HIS596

220113

PDB entries from 2024-05-22

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