5XYU

Small subunit of Mycobacterium smegmatis ribosome

Functional Information from GO Data

Chain	GOid	namespace	contents
C	0003676	molecular_function	nucleic acid binding
C	0003723	molecular_function	RNA binding
C	0003729	molecular_function	mRNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0019843	molecular_function	rRNA binding
C	0022627	cellular_component	cytosolic small ribosomal subunit
C	1990904	cellular_component	ribonucleoprotein complex
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	0015935	cellular_component	small ribosomal subunit
D	0019843	molecular_function	rRNA binding
D	0042274	biological_process	ribosomal small subunit biogenesis
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005737	cellular_component	cytoplasm
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0015935	cellular_component	small ribosomal subunit
E	0019843	molecular_function	rRNA binding
E	0042254	biological_process	ribosome biogenesis
E	1990904	cellular_component	ribonucleoprotein complex
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005737	cellular_component	cytoplasm
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0070181	molecular_function	small ribosomal subunit rRNA binding
F	1990904	cellular_component	ribonucleoprotein complex
G	0000049	molecular_function	tRNA binding
G	0003723	molecular_function	RNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0015935	cellular_component	small ribosomal subunit
G	0019843	molecular_function	rRNA binding
G	1990904	cellular_component	ribonucleoprotein complex
H	0003723	molecular_function	RNA binding
H	0003735	molecular_function	structural constituent of ribosome
H	0005737	cellular_component	cytoplasm
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0019843	molecular_function	rRNA binding
H	1990904	cellular_component	ribonucleoprotein complex
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0005737	cellular_component	cytoplasm
I	0005840	cellular_component	ribosome
I	0006412	biological_process	translation
I	0015935	cellular_component	small ribosomal subunit
I	1990904	cellular_component	ribonucleoprotein complex
J	0000049	molecular_function	tRNA binding
J	0003723	molecular_function	RNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	1990904	cellular_component	ribonucleoprotein complex
K	0003723	molecular_function	RNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0019843	molecular_function	rRNA binding
K	1990904	cellular_component	ribonucleoprotein complex
L	0000049	molecular_function	tRNA binding
L	0003723	molecular_function	RNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
L	0019843	molecular_function	rRNA binding
L	1990904	cellular_component	ribonucleoprotein complex
M	0000049	molecular_function	tRNA binding
M	0003676	molecular_function	nucleic acid binding
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005829	cellular_component	cytosol
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0015935	cellular_component	small ribosomal subunit
M	0019843	molecular_function	rRNA binding
M	1990904	cellular_component	ribonucleoprotein complex
N	0003723	molecular_function	RNA binding
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0008270	molecular_function	zinc ion binding
N	0015935	cellular_component	small ribosomal subunit
N	0019843	molecular_function	rRNA binding
N	0046872	molecular_function	metal ion binding
N	1990904	cellular_component	ribonucleoprotein complex
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005737	cellular_component	cytoplasm
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0019843	molecular_function	rRNA binding
O	0022627	cellular_component	cytosolic small ribosomal subunit
O	1990904	cellular_component	ribonucleoprotein complex
P	0003735	molecular_function	structural constituent of ribosome
P	0005737	cellular_component	cytoplasm
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0015935	cellular_component	small ribosomal subunit
P	1990904	cellular_component	ribonucleoprotein complex
Q	0003723	molecular_function	RNA binding
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0022627	cellular_component	cytosolic small ribosomal subunit
Q	1990904	cellular_component	ribonucleoprotein complex
R	0003723	molecular_function	RNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0019843	molecular_function	rRNA binding
R	0022627	cellular_component	cytosolic small ribosomal subunit
R	0070181	molecular_function	small ribosomal subunit rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
S	0000028	biological_process	ribosomal small subunit assembly
S	0003723	molecular_function	RNA binding
S	0003735	molecular_function	structural constituent of ribosome
S	0005737	cellular_component	cytoplasm
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0015935	cellular_component	small ribosomal subunit
S	0019843	molecular_function	rRNA binding
S	1990904	cellular_component	ribonucleoprotein complex
T	0003723	molecular_function	RNA binding
T	0003735	molecular_function	structural constituent of ribosome
T	0005829	cellular_component	cytosol
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0015935	cellular_component	small ribosomal subunit
T	0019843	molecular_function	rRNA binding
T	0070181	molecular_function	small ribosomal subunit rRNA binding
T	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PDB Data

site_id	AC1
Number of Residues	1
Details	binding site for residue MG A 1601

Chain	Residue
A	U17

---

site_id	AC2
Number of Residues	1
Details	binding site for residue MG A 1602

Chain	Residue
A	C47

---

site_id	AC3
Number of Residues	1
Details	binding site for residue MG A 1604

Chain	Residue
A	A728

---

site_id	AC4
Number of Residues	2
Details	binding site for residue MG A 1606

Chain	Residue
A	G876
A	G877

---

site_id	AC5
Number of Residues	2
Details	binding site for residue MG A 1607

Chain	Residue
A	G926
A	G927

---

site_id	AC6
Number of Residues	1
Details	binding site for residue MG A 1609

Chain	Residue
A	C954

---

site_id	AC7
Number of Residues	1
Details	binding site for residue MG A 1610

Chain	Residue
A	G1030

---

site_id	AC8
Number of Residues	4
Details	binding site for residue MG A 1612

Chain	Residue
A	C1485
A	A1486
A	A1491
A	G1492

---

site_id	AC9
Number of Residues	1
Details	binding site for residue MG A 1613

Chain	Residue
A	G1510

---

site_id	AD1
Number of Residues	1
Details	binding site for residue MG A 1614

Chain	Residue
A	A325

---

site_id	AD2
Number of Residues	2
Details	binding site for residue MG A 1615

Chain	Residue
A	A105
A	G331

---

site_id	AD3
Number of Residues	3
Details	binding site for residue MG A 1616

Chain	Residue
A	A112
A	G113
A	G289

---

site_id	AD4
Number of Residues	3
Details	binding site for residue MG A 1617

Chain	Residue
A	C330
A	G331
A	C352

---

site_id	AD5
Number of Residues	3
Details	binding site for residue MG A 1618

Chain	Residue
A	G299
A	G538
A	A540

---

site_id	AD6
Number of Residues	1
Details	binding site for residue MG A 1621

Chain	Residue
A	G711

---

site_id	AD7
Number of Residues	3
Details	binding site for residue MG A 1622

Chain	Residue
A	A556
A	A739
A	G740

---

site_id	AD8
Number of Residues	1
Details	binding site for residue MG A 1623

Chain	Residue
A	A748

---

site_id	AD9
Number of Residues	3
Details	binding site for residue MG A 1625

Chain	Residue
A	A762
A	C763
A	A774

---

site_id	AE1
Number of Residues	1
Details	binding site for residue MG A 1626

Chain	Residue
A	A1090

---

site_id	AE2
Number of Residues	3
Details	binding site for residue MG A 1627

Chain	Residue
A	C1034
A	A1178
A	G1179

---

site_id	AE3
Number of Residues	2
Details	binding site for residue MG A 1628

Chain	Residue
A	A959
A	U1205

---

site_id	AE4
Number of Residues	2
Details	binding site for residue MG A 1629

Chain	Residue
A	A1208
S	PHE80

---

site_id	AE5
Number of Residues	2
Details	binding site for residue MG A 1630

Chain	Residue
A	G958
A	C1341

---

site_id	AE6
Number of Residues	1
Details	binding site for residue MG A 1631

Chain	Residue
A	G1353

---

site_id	AE7
Number of Residues	2
Details	binding site for residue MG A 1632

Chain	Residue
A	A1467
A	U1468

---

site_id	AE8
Number of Residues	5
Details	binding site for residue MG A 1633

Chain	Residue
A	U1482
A	A1483
A	A1484
A	G1488
A	G1489

---

site_id	AE9
Number of Residues	4
Details	binding site for residue MG A 1634

Chain	Residue
A	A1484
A	G1489
A	A1491
A	G1492

---

site_id	AF1
Number of Residues	1
Details	binding site for residue MG A 1636

Chain	Residue
A	A315

---

site_id	AF2
Number of Residues	3
Details	binding site for residue MG A 1637

Chain	Residue
A	A552
A	A553
A	A554

---

site_id	AF3
Number of Residues	4
Details	binding site for residue MG A 1638

Chain	Residue
A	A556
A	G557
A	C558
A	U800

---

site_id	AF4
Number of Residues	2
Details	binding site for residue MG A 1639

Chain	Residue
A	G557
A	A794

---

site_id	AF5
Number of Residues	1
Details	binding site for residue MG A 1640

Chain	Residue
A	U873

---

site_id	AF6
Number of Residues	3
Details	binding site for residue MG A 1641

Chain	Residue
A	G1033
A	C1034
A	A1178

---

site_id	AF7
Number of Residues	1
Details	binding site for residue MG A 1643

Chain	Residue
A	G25

---

site_id	AF8
Number of Residues	2
Details	binding site for residue MG A 1644

Chain	Residue
A	G840
A	A851

---

site_id	AF9
Number of Residues	3
Details	binding site for residue MG A 1645

Chain	Residue
A	A539
A	A540
A	U542

---

site_id	AG1
Number of Residues	1
Details	binding site for residue MG A 1646

Chain	Residue
A	G324

---

Functional Information from PROSITE/UniProt

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. SqLvtqLVnkvlleGKKslaerIVygA

Chain	Residue	Details
G	SER20-ALA46

---

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GvaIISTSsGLLtdrqAA

Chain	Residue	Details
H	GLY102-ALA119

---

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrSLqaA.GLeVgtisDvTPqPHN

Chain	Residue	Details
K	ILE106-ASN128

---

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
L	LYS43-ARG50

---

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDrVsLmEtRPLS

Chain	Residue	Details
Q	GLY71-SER83

---

site_id	PS00057
Number of Residues	24
Details	RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.TalLrtYISEr.GKIrarRV

Chain	Residue	Details
R	ILE30-VAL53

---

site_id	PS00216
Number of Residues	18
Details	SUGAR_TRANSPORT_1 Sugar transport proteins signature 1. TVDKVDIWGRRrlayeiA

Chain	Residue	Details
F	THR30-ALA47

---

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. DGRkhvpvfVteamVGhkLGEFapT

Chain	Residue	Details
S	ASP53-THR77

---

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGpsGQagAlrlAiARAL

Chain	Residue	Details
I	GLY89-LEU107

---

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. VtrtGAsvvGPVpLPT

Chain	Residue	Details
J	VAL29-THR44

---

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LteHLkvhKhDhhSrrgLllLvgrrrrLlkY

Chain	Residue	Details
O	LEU39-TYR69

---

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CnkcgrphsvyrkFGLCRiCLR

Chain	Residue	Details
N	ARG23-ARG45

---

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. SRsefyreGrVplHt..LradIDyglyeakTtfGriG

Chain	Residue	Details
C	SER163-GLY197

---

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfsFtAlvIVGDgk.GmVGvGygkak.EVpa.AI

Chain	Residue	Details
E	GLY53-ILE85

---

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEsRLdnvVYRaglArTrrmARqLV

Chain	Residue	Details
D	LEU89-VAL113

---

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. QGlRHrrGlpVRGQ

Chain	Residue	Details
M	GLN88-GLN101

---

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VkIKLTRLGK

Chain	Residue	Details
P	VAL3-LYS12

---

site_id	PS01048
Number of Residues	10
Details	RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRRLAYeIA

Chain	Residue	Details
F	GLY38-ALA47

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	63
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"HAMAP-Rule","id":"MF_01307","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	Cross-link: {"description":"Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)","evidences":[{"source":"PubMed","id":"20094657","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	38
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	23
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	1
Details	Modified residue: {"description":"3-methylthioaspartic acid","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---