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5XWC

Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-iminoglutarate, 2-amino-2-hydroxyglutarate and NADP

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005829cellular_componentcytosol
A0006520biological_processamino acid metabolic process
A0006537biological_processglutamate biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
Functional Information from PDB Data
site_idAC1
Number of Residues41
Detailsbinding site for residue NAP A 501
ChainResidue
AARG82
AGLY230
AASN231
AVAL232
ASER251
AASP252
ASER253
ALYS277
AGLN282
ASER319
AALA320
AHIS84
ATHR321
AGLY344
ASER345
AASN346
AASN379
A8GL502
A2IT503
AGOL504
AGOL516
AGOL547
ALYS122
AHOH602
AHOH648
AHOH657
AHOH671
AHOH718
AHOH738
AHOH755
AHOH762
AHOH812
AHOH863
AASP154
AHOH866
AHOH895
AILE155
AGLY156
AARG193
ATHR197
ASER229

site_idAC2
Number of Residues9
Detailsbinding site for residue GOL A 504
ChainResidue
AGLY153
AASP154
AGLY182
AARG193
ANAP501
AGOL531
AHOH604
AHOH648
AHOH758

site_idAC3
Number of Residues5
Detailsbinding site for residue GOL A 505
ChainResidue
ALYS142
AHOH622
AHOH622
AHOH665
AHOH665

site_idAC4
Number of Residues9
Detailsbinding site for residue GOL A 506
ChainResidue
ALEU105
AGLY107
AASP414
ACYS415
AASN418
ALYS448
AGOL549
AHOH638
AHOH917

site_idAC5
Number of Residues10
Detailsbinding site for residue GOL A 507
ChainResidue
ATYR199
ATYR203
ALYS239
AGLU242
ASER401
AASP405
AHOH619
AHOH634
AHOH649
AHOH890

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL A 508
ChainResidue
APRO43
AGLN48
APHE49
AARG50
AARG64
ALYS93
AHOH734

site_idAC7
Number of Residues9
Detailsbinding site for residue GOL A 509
ChainResidue
AALA304
AARG305
APRO306
ATRP307
AVAL308
AGLU329
AHOH615
AHOH714
AHOH931

site_idAC8
Number of Residues9
Detailsbinding site for residue GOL A 510
ChainResidue
ASER72
APRO76
ATYR77
ATHR148
AARG170
AASN174
AGLN175
ATRP176
AHOH672

site_idAC9
Number of Residues6
Detailsbinding site for residue GOL A 511
ChainResidue
AGLU217
ALYS220
AGLY221
ALYS222
AHOH660
AHOH694

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL A 512
ChainResidue
ATHR447
ALYS448
AGOL534
AHOH654
AHOH698

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL A 513
ChainResidue
AGLN12
ATHR350
AGLN351
AGLU352

site_idAD3
Number of Residues9
Detailsbinding site for residue GOL A 514
ChainResidue
AGLY107
ALEU108
AASN109
ASER186
ALYS448
AHOH603
AHOH605
AHOH638
AHOH727

site_idAD4
Number of Residues8
Detailsbinding site for residue GOL A 515
ChainResidue
AASP252
ASER253
AGLY303
AALA304
AGOL516
AHOH628
AHOH785
AHOH904

site_idAD5
Number of Residues10
Detailsbinding site for residue GOL A 516
ChainResidue
AARG305
ATHR321
AGLN322
AASN323
ANAP501
AGOL515
AGOL547
AHOH733
AHOH785
AHOH853

site_idAD6
Number of Residues4
Detailsbinding site for residue GOL A 517
ChainResidue
AGLU403
AARG407
AGOL527
AHOH627

site_idAD7
Number of Residues6
Detailsbinding site for residue GOL A 518
ChainResidue
APHE10
ATYR14
ASER41
AHOH606
AHOH642
AHOH724

site_idAD8
Number of Residues5
Detailsbinding site for residue GOL A 519
ChainResidue
ALYS35
AVAL60
AVAL62
AHOH620
AHOH728

site_idAD9
Number of Residues7
Detailsbinding site for residue GOL A 520
ChainResidue
ALYS183
AGLY185
ASER190
AHOH609
AHOH613
AHOH704
AHOH1002

site_idAE1
Number of Residues7
Detailsbinding site for residue GOL A 521
ChainResidue
ALEU191
ASER398
ATRP399
ATHR400
AGOL527
AHOH608
AHOH896

site_idAE2
Number of Residues7
Detailsbinding site for residue GOL A 522
ChainResidue
AGLY123
ALYS124
AGLU279
AARG280
AGOL544
AHOH902
AHOH929

site_idAE3
Number of Residues6
Detailsbinding site for residue GOL A 523
ChainResidue
AASN3
APRO8
AGLU9
AASN88
ASER90
AHOH794

site_idAE4
Number of Residues5
Detailsbinding site for residue GOL A 524
ChainResidue
ALYS312
ALYS312
AGOL537
AGOL537
AHOH726

site_idAE5
Number of Residues11
Detailsbinding site for residue GOL A 525
ChainResidue
AGLY145
AALA146
AASP147
ATHR148
ATYR169
AARG173
AGLN175
AGLN175
AGLU177
AHOH610
AHOH870

site_idAE6
Number of Residues5
Detailsbinding site for residue GOL A 526
ChainResidue
APRO8
AGLU11
ALYS15
AHOH614
AHOH770

site_idAE7
Number of Residues7
Detailsbinding site for residue GOL A 527
ChainResidue
ASER398
AGLU403
AARG407
AGOL517
AGOL521
AGOL530
AHOH616

site_idAE8
Number of Residues5
Detailsbinding site for residue GOL A 528
ChainResidue
APHE292
ASER293
APHE298
ATYR300
AHOH673

site_idAE9
Number of Residues3
Detailsbinding site for residue GOL A 529
ChainResidue
ATHR428
APRO429
AHOH711

site_idAF1
Number of Residues5
Detailsbinding site for residue GOL A 530
ChainResidue
ALEU108
ASER398
AARG407
AGOL527
AHOH612

site_idAF2
Number of Residues7
Detailsbinding site for residue GOL A 531
ChainResidue
ATHR158
AGLY159
APRO194
AGOL504
AHOH604
AHOH617
AHOH758

site_idAF3
Number of Residues7
Detailsbinding site for residue GOL A 532
ChainResidue
ATRP53
AGLN61
AVAL62
AASN63
AHOH620
AHOH643
AHOH647

site_idAF4
Number of Residues6
Detailsbinding site for residue GOL A 533
ChainResidue
ALYS15
ASER19
AGLN351
AASP355
AHOH659
AHOH706

site_idAF5
Number of Residues3
Detailsbinding site for residue GOL A 534
ChainResidue
AGOL512
AGOL541
AHOH658

site_idAF6
Number of Residues6
Detailsbinding site for residue GOL A 535
ChainResidue
AASN418
ATHR422
ATYR426
ATHR447
AGOL548
AHOH740

site_idAF7
Number of Residues7
Detailsbinding site for residue GOL A 536
ChainResidue
AHIS207
AALA210
AGOL550
AGOL551
AHOH623
AHOH666
AHOH766

site_idAF8
Number of Residues5
Detailsbinding site for residue GOL A 537
ChainResidue
AGLU262
AGLY311
ALYS312
AGOL524
AGOL524

site_idAF9
Number of Residues5
Detailsbinding site for residue GOL A 538
ChainResidue
AALA212
AASN214
AGLY366
AALA367
AHOH630

site_idAG1
Number of Residues6
Detailsbinding site for residue GOL A 539
ChainResidue
AGLY263
ASER264
AASN296
ALYS297
AGOL543
AHOH601

site_idAG2
Number of Residues4
Detailsbinding site for residue GOL A 540
ChainResidue
AGLN234
ATYR235
AGLU271
AHOH661

site_idAG3
Number of Residues7
Detailsbinding site for residue GOL A 541
ChainResidue
AALA451
AASP455
AGOL534
AHOH658
AHOH695
AHOH743
AHOH824

site_idAG4
Number of Residues3
Detailsbinding site for residue GOL A 542
ChainResidue
ALYS142
AHOH810
AHOH865

site_idAG5
Number of Residues4
Detailsbinding site for residue GOL A 543
ChainResidue
AGLU262
AALA295
AGOL539
AHOH739

site_idAG6
Number of Residues5
Detailsbinding site for residue GOL A 544
ChainResidue
AGLY123
ASER125
AGOL522
AHOH685
AHOH716

site_idAG7
Number of Residues5
Detailsbinding site for residue GOL A 545
ChainResidue
AARG361
APRO429
AHOH669
AHOH722
AHOH772

site_idAG8
Number of Residues4
Detailsbinding site for residue GOL A 546
ChainResidue
ATYR14
AGLU22
AARG34
AHOH691

site_idAG9
Number of Residues5
Detailsbinding site for residue GOL A 547
ChainResidue
ATHR321
AGLN322
ANAP501
AGOL516
AHOH710

site_idAH1
Number of Residues6
Detailsbinding site for residue GOL A 548
ChainResidue
AASN418
AGLU421
ATHR422
AGLU425
AGOL535
AGOL549

site_idAH2
Number of Residues5
Detailsbinding site for residue GOL A 549
ChainResidue
AASP414
AGLU421
AGOL506
AGOL548
AHOH621

site_idAH3
Number of Residues5
Detailsbinding site for residue GOL A 550
ChainResidue
AHIS207
AHIS211
APHE416
AGOL536
AHOH611

site_idAH4
Number of Residues6
Detailsbinding site for residue GOL A 551
ChainResidue
AALA210
AGLY215
AGLU217
AGOL536
AHOH626
AHOH631

site_idAH5
Number of Residues3
Detailsbinding site for residue GOL A 552
ChainResidue
ALEU4
AHIS6
AGLU11

site_idAH6
Number of Residues5
Detailsbinding site for residue PEG A 553
ChainResidue
ATHR276
AGLU279
ALYS281
AILE286
AHOH640

site_idAH7
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAH8
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAH9
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI1
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI2
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI3
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI4
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI5
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

site_idAI6
Number of Residues16
Detailsbinding site for residues 8GL A 502 and 2IT A 503
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANAP501
AHOH676

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. LnmGGGKgGsdfDP
ChainResidueDetails
ALEU108-PRO121

221051

PDB entries from 2024-06-12

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