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5XW0

Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Isophthalate and NADPH

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005829cellular_componentcytosol
A0006520biological_processamino acid metabolic process
A0006537biological_processglutamate biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
Functional Information from PDB Data
site_idAC1
Number of Residues38
Detailsbinding site for residue NDP A 501
ChainResidue
AARG82
ASER229
AGLY230
AASN231
AVAL232
ASER251
AASP252
ASER253
AGLN282
ASER319
AALA320
AHIS84
ATHR321
AGLY344
ASER345
AASN346
AASN379
A8G0502
AGOL507
AGOL508
AHOH636
AHOH652
ALYS122
AHOH660
AHOH667
AHOH680
AHOH702
AHOH706
AHOH725
AHOH728
AHOH736
AHOH815
AGLY153
AASP154
AILE155
AGLY156
AARG193
ATHR197

site_idAC2
Number of Residues15
Detailsbinding site for residue 8G0 A 502
ChainResidue
ALYS78
AGLY79
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
ATHR181
AARG193
AASN346
AVAL383
ASER386
ANDP501
AHOH638

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL A 503
ChainResidue
APRO43
AGLN48
APHE49
AARG50
AARG64
ALYS93
AHOH601
AHOH679

site_idAC4
Number of Residues5
Detailsbinding site for residue GOL A 504
ChainResidue
ALYS183
AGLY185
ASER190
APRO194
AHOH604

site_idAC5
Number of Residues9
Detailsbinding site for residue GOL A 505
ChainResidue
ASER72
APRO76
ATYR77
ATHR148
AARG170
AASN174
AGLN175
ATRP176
AHOH631

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL A 506
ChainResidue
ALEU105
AASP414
ACYS415
AASN418
ALYS448
APEG518
AHOH759

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL A 507
ChainResidue
AALA152
AGLY153
AGLY182
AARG193
ANDP501
AHOH617
AHOH652

site_idAC8
Number of Residues7
Detailsbinding site for residue GOL A 508
ChainResidue
AARG305
AGLN322
AASN323
ANDP501
AGOL513
AHOH608
AHOH618

site_idAC9
Number of Residues3
Detailsbinding site for residue GOL A 509
ChainResidue
ATRP399
AGLU403
AARG407

site_idAD1
Number of Residues5
Detailsbinding site for residue GOL A 510
ChainResidue
ATYR14
ASER41
AHOH614
AHOH640
AHOH673

site_idAD2
Number of Residues5
Detailsbinding site for residue GOL A 511
ChainResidue
ATYR33
ALYS448
APEG518
AHOH612
AHOH658

site_idAD3
Number of Residues7
Detailsbinding site for residue GOL A 512
ChainResidue
ALYS142
AHIS143
AILE144
AARG173
AASN174
AGLN175
AHOH783

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL A 513
ChainResidue
AASP252
AGLY303
AALA304
AGOL508
AHOH637

site_idAD5
Number of Residues3
Detailsbinding site for residue GOL A 514
ChainResidue
AGLY123
ALYS124
AARG280

site_idAD6
Number of Residues3
Detailsbinding site for residue GOL A 515
ChainResidue
ALYS142
AHOH620
AHOH620

site_idAD7
Number of Residues7
Detailsbinding site for residue PEG A 516
ChainResidue
AASN109
AGLY188
AGLY189
AGLN392
AASN393
AARG396
AHOH773

site_idAD8
Number of Residues4
Detailsbinding site for residue PEG A 517
ChainResidue
ASER264
AASN296
ALYS297
AHOH606

site_idAD9
Number of Residues8
Detailsbinding site for residue PEG A 518
ChainResidue
AGLY107
AASN109
ASER186
ALYS448
AGOL506
AGOL511
AHOH661
AHOH762

site_idAE1
Number of Residues5
Detailsbinding site for residue PEG A 519
ChainResidue
ATYR203
AGLU206
AHIS207
ALYS409
AHOH814

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. LnmGGGKgGsdfDP
ChainResidueDetails
ALEU108-PRO121

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PDB entries from 2024-09-11

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