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5XVX

Crystal Structure of Aspergillus niger Glutamate Dehydrogenase Complexed With Alpha-ketoglutarate and NADPH

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004353molecular_functionglutamate dehydrogenase [NAD(P)+] activity
A0004354molecular_functionglutamate dehydrogenase (NADP+) activity
A0005829cellular_componentcytosol
A0006520biological_processamino acid metabolic process
A0006537biological_processglutamate biosynthetic process
A0016491molecular_functionoxidoreductase activity
A0016639molecular_functionoxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor
Functional Information from PDB Data
site_idAC1
Number of Residues41
Detailsbinding site for residue NDP A 501
ChainResidue
AARG82
ASER229
AGLY230
AASN231
AVAL232
ASER251
AASP252
ASER253
AGLN282
ASER319
AALA320
AHIS84
ATHR321
AGLY344
ASER345
AASN346
AASN379
AAKG502
AGOL524
AHOH607
AHOH641
AHOH660
ALYS122
AHOH664
AHOH728
AHOH758
AHOH769
AHOH775
AHOH810
AHOH820
AHOH826
AHOH827
AHOH925
AASP154
AHOH947
AHOH951
AILE155
AGLY156
AARG193
ATHR197
AGLY228

site_idAC2
Number of Residues16
Detailsbinding site for residue AKG A 502
ChainResidue
ALYS78
AGLY79
AGLY80
AGLN99
ALYS102
ALYS114
AALA152
AGLY153
AASP154
AARG193
AASN346
AVAL383
ASER386
ANDP501
AHOH601
AHOH675

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL A 503
ChainResidue
AGLN12
AASN323
ATHR350
AGLN351
AGLU352
AHOH716

site_idAC4
Number of Residues8
Detailsbinding site for residue GOL A 504
ChainResidue
ALYS35
AVAL60
AGLN61
AHOH608
AHOH669
AHOH670
AHOH691
AHOH1055

site_idAC5
Number of Residues6
Detailsbinding site for residue GOL A 505
ChainResidue
ALYS142
AHIS143
AILE144
ATHR148
AARG173
AHOH613

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL A 506
ChainResidue
ALEU105
AGLY107
AASP414
ACYS415
AASN418
ALYS448
AHOH697

site_idAC7
Number of Residues7
Detailsbinding site for residue GOL A 507
ChainResidue
ASER398
AGLU403
AARG407
AGOL508
AHOH614
AHOH619
AHOH637

site_idAC8
Number of Residues8
Detailsbinding site for residue GOL A 508
ChainResidue
ATRP399
AGLU403
AARG407
AGOL507
AHOH614
AHOH705
AHOH871
AHOH989

site_idAC9
Number of Residues7
Detailsbinding site for residue GOL A 509
ChainResidue
ALYS220
AGLY221
ALYS222
AASP314
AHOH733
AHOH740
AHOH997

site_idAD1
Number of Residues6
Detailsbinding site for residue GOL A 510
ChainResidue
ASER86
AHOH606
AHOH641
AHOH840
AHOH947
AHOH1164

site_idAD2
Number of Residues4
Detailsbinding site for residue GOL A 511
ChainResidue
ASER41
AARG64
AHOH707
AHOH1000

site_idAD3
Number of Residues12
Detailsbinding site for residue GOL A 512
ChainResidue
AGLY107
AGLY185
ALYS448
AHOH667
AHOH697
AHOH751
AHOH757
AHOH780
AHOH793
AHOH838
AHOH1026
AHOH1175

site_idAD4
Number of Residues5
Detailsbinding site for residue GOL A 513
ChainResidue
AILE334
AGLY337
ALYS339
AHOH659
AHOH959

site_idAD5
Number of Residues3
Detailsbinding site for residue GOL A 514
ChainResidue
ATHR428
APRO429
AHOH962

site_idAD6
Number of Residues4
Detailsbinding site for residue GOL A 515
ChainResidue
AARG223
AGLY261
AGLY311
ALYS312

site_idAD7
Number of Residues8
Detailsbinding site for residue GOL A 516
ChainResidue
ALYS35
AGLY58
AASN59
AASN127
ATRP460
AHOH645
AHOH802
AHOH921

site_idAD8
Number of Residues8
Detailsbinding site for residue GOL A 517
ChainResidue
ATRP53
AGLN61
AVAL62
AASN63
ALYS124
AHOH608
AHOH649
AHOH774

site_idAD9
Number of Residues5
Detailsbinding site for residue GOL A 518
ChainResidue
AASP294
AASN296
AHOH632
AHOH638
AHOH656

site_idAE1
Number of Residues8
Detailsbinding site for residue GOL A 519
ChainResidue
AASP252
ASER253
AGLY303
AALA304
AHOH686
AHOH688
AHOH756
AHOH984

site_idAE2
Number of Residues9
Detailsbinding site for residue GOL A 520
ChainResidue
AGLY178
AASN393
ASER394
AARG396
AHOH612
AHOH665
AHOH706
AHOH855
AHOH855

site_idAE3
Number of Residues5
Detailsbinding site for residue GOL A 521
ChainResidue
ATYR14
AALA18
AGLU22
AARG34
AHOH771

site_idAE4
Number of Residues3
Detailsbinding site for residue GOL A 522
ChainResidue
ALYS220
AGLU242
AHOH1015

site_idAE5
Number of Residues3
Detailsbinding site for residue GOL A 523
ChainResidue
ASER293
AHOH719
AHOH825

site_idAE6
Number of Residues9
Detailsbinding site for residue GOL A 524
ChainResidue
AGLY153
AVAL157
AGLY182
AARG193
ANDP501
AHOH609
AHOH625
AHOH810
AHOH865

site_idAE7
Number of Residues7
Detailsbinding site for residue GOL A 525
ChainResidue
ALYS142
ALYS142
AHOH613
AHOH613
AHOH627
AHOH662
AHOH662

site_idAE8
Number of Residues2
Detailsbinding site for residue PEG A 526
ChainResidue
AHIS207
AHOH904

site_idAE9
Number of Residues7
Detailsbinding site for residue PEG A 527
ChainResidue
AHIS211
AALA212
AASN214
AGLY366
AALA367
APRO435
AHOH736

Functional Information from PROSITE/UniProt
site_idPS00074
Number of Residues14
DetailsGLFV_DEHYDROGENASE Glu / Leu / Phe / Val dehydrogenases active site. LnmGGGKgGsdfDP
ChainResidueDetails
ALEU108-PRO121

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PDB entries from 2024-08-07

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