5XVC
[NiFe]-hydrogenase (Hyb-type) from Citrobacter sp. S-77 in a ferricyanide-oxidized condition
Functional Information from GO Data
Chain | GOid | namespace | contents |
L | 0005886 | cellular_component | plasma membrane |
L | 0008901 | molecular_function | ferredoxin hydrogenase activity |
L | 0016020 | cellular_component | membrane |
L | 0016151 | molecular_function | nickel cation binding |
L | 0016491 | molecular_function | oxidoreductase activity |
L | 0046872 | molecular_function | metal ion binding |
M | 0005886 | cellular_component | plasma membrane |
M | 0008901 | molecular_function | ferredoxin hydrogenase activity |
M | 0016020 | cellular_component | membrane |
M | 0016151 | molecular_function | nickel cation binding |
M | 0016491 | molecular_function | oxidoreductase activity |
M | 0046872 | molecular_function | metal ion binding |
S | 0008901 | molecular_function | ferredoxin hydrogenase activity |
S | 0009055 | molecular_function | electron transfer activity |
S | 0009061 | biological_process | anaerobic respiration |
S | 0009375 | cellular_component | ferredoxin hydrogenase complex |
S | 0016020 | cellular_component | membrane |
S | 0016491 | molecular_function | oxidoreductase activity |
S | 0033748 | molecular_function | hydrogenase (acceptor) activity |
S | 0044569 | cellular_component | [Ni-Fe] hydrogenase complex |
S | 0046872 | molecular_function | metal ion binding |
S | 0051536 | molecular_function | iron-sulfur cluster binding |
S | 0051538 | molecular_function | 3 iron, 4 sulfur cluster binding |
S | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
T | 0008901 | molecular_function | ferredoxin hydrogenase activity |
T | 0009055 | molecular_function | electron transfer activity |
T | 0009061 | biological_process | anaerobic respiration |
T | 0009375 | cellular_component | ferredoxin hydrogenase complex |
T | 0016020 | cellular_component | membrane |
T | 0016491 | molecular_function | oxidoreductase activity |
T | 0033748 | molecular_function | hydrogenase (acceptor) activity |
T | 0044569 | cellular_component | [Ni-Fe] hydrogenase complex |
T | 0046872 | molecular_function | metal ion binding |
T | 0051536 | molecular_function | iron-sulfur cluster binding |
T | 0051538 | molecular_function | 3 iron, 4 sulfur cluster binding |
T | 0051539 | molecular_function | 4 iron, 4 sulfur cluster binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 6 |
Details | binding site for residue MG L 601 |
Chain | Residue |
L | GLU42 |
L | ALA498 |
L | HIS552 |
L | HOH708 |
L | HOH738 |
L | HOH764 |
site_id | AC2 |
Number of Residues | 13 |
Details | binding site for residue NFV L 602 |
Chain | Residue |
L | HIS68 |
L | ALA477 |
L | PRO478 |
L | ARG479 |
L | LEU482 |
L | VAL500 |
L | PRO501 |
L | SER502 |
L | CSO546 |
L | CYS549 |
L | CYS61 |
L | CYS64 |
L | THR67 |
site_id | AC3 |
Number of Residues | 8 |
Details | binding site for residue PEG L 603 |
Chain | Residue |
L | GLN178 |
L | TYR269 |
L | PRO270 |
L | GLU271 |
L | TRP272 |
L | ARG275 |
L | PRO526 |
L | HOH847 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue SF4 S 500 |
Chain | Residue |
S | HIS192 |
S | CYS195 |
S | ARG198 |
S | CYS220 |
S | LEU221 |
S | CYS226 |
site_id | AC5 |
Number of Residues | 9 |
Details | binding site for residue F3S S 501 |
Chain | Residue |
L | LYS211 |
L | GLN216 |
S | CYS235 |
S | PHE240 |
S | CYS255 |
S | TYR256 |
S | GLY257 |
S | CYS258 |
S | ASN259 |
site_id | AC6 |
Number of Residues | 12 |
Details | binding site for residue 8JU S 502 |
Chain | Residue |
S | CYS22 |
S | THR23 |
S | GLY24 |
S | CYS25 |
S | ASP81 |
S | GLY118 |
S | SER119 |
S | CYS120 |
S | GLY153 |
S | CYS154 |
S | PRO155 |
S | HOH619 |
site_id | AC7 |
Number of Residues | 6 |
Details | binding site for residue MG M 700 |
Chain | Residue |
M | GLU42 |
M | ALA498 |
M | HIS552 |
M | HOH821 |
M | HOH875 |
M | HOH876 |
site_id | AC8 |
Number of Residues | 13 |
Details | binding site for residue NFV M 701 |
Chain | Residue |
M | CYS61 |
M | CYS64 |
M | THR67 |
M | HIS68 |
M | ALA477 |
M | PRO478 |
M | ARG479 |
M | LEU482 |
M | VAL500 |
M | PRO501 |
M | SER502 |
M | CSO546 |
M | CYS549 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue SF4 T 500 |
Chain | Residue |
T | HIS192 |
T | CYS195 |
T | ARG197 |
T | ARG198 |
T | CYS220 |
T | LEU221 |
T | CYS226 |
site_id | AD1 |
Number of Residues | 9 |
Details | binding site for residue F3S T 501 |
Chain | Residue |
M | GLN216 |
T | ILE191 |
T | CYS235 |
T | PHE240 |
T | CYS255 |
T | TYR256 |
T | GLY257 |
T | CYS258 |
T | ASN259 |
site_id | AD2 |
Number of Residues | 12 |
Details | binding site for residue 8JU T 502 |
Chain | Residue |
T | PRO155 |
T | HOH610 |
T | CYS22 |
T | THR23 |
T | GLY24 |
T | CYS25 |
T | ASP81 |
T | GLY82 |
T | SER119 |
T | CYS120 |
T | GLY153 |
T | CYS154 |
site_id | AD3 |
Number of Residues | 14 |
Details | binding site for Di-peptide PRO M 545 and CSO M 546 |
Chain | Residue |
M | ILE13 |
M | GLU14 |
M | CYS61 |
M | SER502 |
M | TYR518 |
M | ILE540 |
M | PHE543 |
M | ASP544 |
M | MET547 |
M | SER548 |
M | CYS549 |
M | ALA550 |
M | NFV701 |
M | HOH869 |
site_id | AD4 |
Number of Residues | 14 |
Details | binding site for Di-peptide CSO M 546 and MET M 547 |
Chain | Residue |
M | GLU14 |
M | HIS16 |
M | LEU17 |
M | GLY35 |
M | CYS61 |
M | SER502 |
M | ASP544 |
M | PRO545 |
M | SER548 |
M | CYS549 |
M | ALA550 |
M | VAL551 |
M | NFV701 |
M | HOH814 |
Functional Information from PROSITE/UniProt
site_id | PS00507 |
Number of Residues | 26 |
Details | NI_HGENASE_L_1 Nickel-dependent hydrogenases large subunit signature 1. RGMEeivknrdprdawmivQRiCGVC |
Chain | Residue | Details |
L | ARG39-CYS64 |
site_id | PS00508 |
Number of Residues | 10 |
Details | NI_HGENASE_L_2 Nickel-dependent hydrogenases large subunit signature 2. FDPCMSCav.H |
Chain | Residue | Details |
L | PHE543-HIS552 |