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5XSF

Crystal structure of the 2-keto-3-deoxy-6-phosphogluconate aldolase of Zymomonas mobilis ZM4 with 3-phosphoglycerate

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0008675molecular_function2-dehydro-3-deoxy-phosphogluconate aldolase activity
A0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues8
Detailsbinding site for residue PO4 A 301
ChainResidue
AGLU41
AARG45
ATHR68
AVAL87
ASER88
APRO89
ALYS128
AHOH422

site_idAC2
Number of Residues3
Detailsbinding site for residue PO4 A 302
ChainResidue
AARG152
AHOH423
AARG9

site_idAC3
Number of Residues6
Detailsbinding site for residue 3PG A 303
ChainResidue
AARG45
ATHR156
AGLY157
AGLY158
ASER179
AHOH415

site_idAC4
Number of Residues10
Detailsbinding site for residue 3PY A 304
ChainResidue
AVAL18
AGLU20
AASP21
AASP24
AILE28
AVAL182
APRO183
AGLY185
AHOH417
AHOH457

Functional Information from PROSITE/UniProt
site_idPS00159
Number of Residues10
DetailsALDOLASE_KDPG_KHG_1 KDPG and KHG aldolases active site. GLnvlEVTLR
ChainResidueDetails
AGLY36-ARG45

site_idPS00160
Number of Residues14
DetailsALDOLASE_KDPG_KHG_2 KDPG and KHG aldolases Schiff-base forming residue. GldrFKFFPAeniG
ChainResidueDetails
AGLY123-GLY136

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton acceptor","evidences":[{"source":"UniProtKB","id":"P0A955","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Schiff-base intermediate with substrate","evidences":[{"source":"UniProtKB","id":"P0A955","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P0A955","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsBinding site: {"description":"covalent","evidences":[{"source":"UniProtKB","id":"P0A955","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Plays a major role in determining the stereoselectivity","evidences":[{"source":"UniProtKB","id":"P0A955","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

249697

PDB entries from 2026-02-25

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