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5XNO

Structure of M-LHCII and CP24 complexes in the unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum

Functional Information from GO Data
ChainGOidnamespacecontents
10009765biological_processphotosynthesis, light harvesting
10016020cellular_componentmembrane
20009765biological_processphotosynthesis, light harvesting
20016020cellular_componentmembrane
30009416biological_processresponse to light stimulus
30009507cellular_componentchloroplast
30009517cellular_componentPSII associated light-harvesting complex II
30009522cellular_componentphotosystem I
30009523cellular_componentphotosystem II
30009535cellular_componentchloroplast thylakoid membrane
30009579cellular_componentthylakoid
30009635biological_processresponse to herbicide
30009644biological_processresponse to high light intensity
30009737biological_processresponse to abscisic acid
30009765biological_processphotosynthesis, light harvesting
30009768biological_processphotosynthesis, light harvesting in photosystem I
30009769biological_processphotosynthesis, light harvesting in photosystem II
30009941cellular_componentchloroplast envelope
30010119biological_processregulation of stomatal movement
30010287cellular_componentplastoglobule
30015979biological_processphotosynthesis
30016020cellular_componentmembrane
30016168molecular_functionchlorophyll binding
30019904molecular_functionprotein domain specific binding
30042651cellular_componentthylakoid membrane
40009416biological_processresponse to light stimulus
40009507cellular_componentchloroplast
40009522cellular_componentphotosystem I
40009523cellular_componentphotosystem II
40009535cellular_componentchloroplast thylakoid membrane
40009579cellular_componentthylakoid
40009765biological_processphotosynthesis, light harvesting
40009768biological_processphotosynthesis, light harvesting in photosystem I
40015979biological_processphotosynthesis
40016020cellular_componentmembrane
40016168molecular_functionchlorophyll binding
Functional Information from PDB Data
site_idAC1
Number of Residues13
Detailsbinding site for residue CHL 1 601
ChainResidue
1LYS23
1CLA602
1XAT1622
1LHG2630
2CHL609
1TYR24
1LEU25
1GLY26
1PRO27
1PHE28
1TYR44
1TRP46
1PHE189

site_idAC2
Number of Residues21
Detailsbinding site for residue CLA 1 602
ChainResidue
1LEU36
1PRO41
1GLY42
1ASP43
1TYR44
1GLY45
1TRP46
1ASP47
1LEU51
1SER52
1ASN61
1ARG62
1GLU65
1HIS68
1ARG185
1MET188
1PHE192
1CHL601
1CLA603
1LUT1621
2CLA603

site_idAC3
Number of Residues8
Detailsbinding site for residue CLA 1 603
ChainResidue
1HIS68
1PHE192
1CLA602
1CHL607
1CHL609
1LUT1621
3ALA58
3LEU60

site_idAC4
Number of Residues13
Detailsbinding site for residue CLA 1 604
ChainResidue
1LEU74
1GLY75
1GLY78
1PHE81
1PHE92
1GLU94
1GLN103
1LEU110
1TYR112
1LEU113
1CHL606
1LUT1621
1NEX1623

site_idAC5
Number of Residues9
Detailsbinding site for residue CHL 1 605
ChainResidue
1SER117
1LEU118
1VAL119
1HIS120
1ALA121
1GLN122
1SER123
1ALA126
1CHL606

site_idAC6
Number of Residues13
Detailsbinding site for residue CHL 1 606
ChainResidue
1TRP71
1GLY101
1VAL119
1ALA121
1ILE127
1THR130
1GLN131
1CLA604
1CHL605
1CHL607
1CHL609
1LUT1621
1NEX1623

site_idAC7
Number of Residues18
Detailsbinding site for residue CHL 1 607
ChainResidue
1TRP97
1PHE98
1LYS99
1GLY101
1SER102
1GLN131
1PHE195
1CLA603
1CHL606
1CHL609
1LUT1621
3TRP233
3ALA236
3THR237
3PHE239
3VAL240
3CHL601
3XAT1622

site_idAC8
Number of Residues14
Detailsbinding site for residue CHL 1 608
ChainResidue
1ARG142
1GLY146
1PRO147
1LEU148
1GLY149
1PRO154
1PRO157
1PHE161
1CLA610
1NEX1623
1ARG70
1TRP71
1VAL138
1TYR141

site_idAC9
Number of Residues15
Detailsbinding site for residue CHL 1 609
ChainResidue
1LEU64
1ILE67
1HIS68
1TRP71
1GLN131
1GLY136
1GLU139
1ARG142
1CLA603
1CHL606
1CHL607
3TRP55
3THR57
3CHL601
3XAT1622

site_idAD1
Number of Residues13
Detailsbinding site for residue CLA 1 610
ChainResidue
1ARG70
1MET73
1TYR156
1PRO157
1GLY158
1PHE161
1PHE173
1LEU176
1LYS177
1GLU180
1CHL608
1CLA612
1LUT1620

site_idAD2
Number of Residues7
Detailsbinding site for residue CLA 1 611
ChainResidue
1TRP16
1LYS179
1LYS182
1ASN183
1CLA612
1XAT1622
1LHG2630

site_idAD3
Number of Residues6
Detailsbinding site for residue CLA 1 612
ChainResidue
1LEU77
1LYS179
1ASN183
1CLA610
1CLA611
1LUT1620

site_idAD4
Number of Residues11
Detailsbinding site for residue CLA 1 613
ChainResidue
1SER190
1GLY193
1GLN197
1THR201
1ASN208
1HIS212
1ASN220
1ALA221
1TYR224
1CLA614
1LUT1620

site_idAD5
Number of Residues5
Detailsbinding site for residue CLA 1 614
ChainResidue
1HIS212
1PRO216
1ASN220
1TRP222
1CLA613

site_idAD6
Number of Residues13
Detailsbinding site for residue LUT 1 1620
ChainResidue
1MET73
1PHE161
1ASP162
1PRO163
1LEU164
1ASN183
1SER190
1PHE194
1GLN197
1PRO205
1CLA610
1CLA612
1CLA613

site_idAD7
Number of Residues18
Detailsbinding site for residue LUT 1 1621
ChainResidue
1TRP46
1ASP47
1THR48
1ALA49
1TRP71
1GLY75
1GLY78
1CYS79
1TRP97
1MET188
1MET191
1PHE192
1CLA602
1CLA603
1CLA604
1CHL606
1CHL607
2CLA603

site_idAD8
Number of Residues9
Detailsbinding site for residue XAT 1 1622
ChainResidue
1ALA221
1TRP222
1ALA225
1PHE228
1CHL601
1CLA611
1LHG2630
2TRP128
2CHL607

site_idAD9
Number of Residues7
Detailsbinding site for residue NEX 1 1623
ChainResidue
1TRP71
1TYR112
1LEU134
1TYR141
1CLA604
1CHL606
1CHL608

site_idAE1
Number of Residues7
Detailsbinding site for residue LHG 1 2630
ChainResidue
1TYR44
1LYS182
1LEU186
1PHE189
1CHL601
1CLA611
1XAT1622

site_idAE2
Number of Residues13
Detailsbinding site for residue CHL 2 601
ChainResidue
2VAL22
2LYS23
2TYR24
2LEU25
2GLY26
2PRO27
2PHE28
2TYR44
2TRP46
2CLA602
2XAT1622
2LHG2630
3CHL609

site_idAE3
Number of Residues18
Detailsbinding site for residue CLA 2 602
ChainResidue
2LEU36
2PRO41
2GLY42
2ASP43
2TYR44
2GLY45
2TRP46
2ASP47
2LEU51
2SER52
2ASN61
2ARG62
2GLU65
2ARG185
2MET188
2CHL601
2CLA603
2LUT1621

site_idAE4
Number of Residues9
Detailsbinding site for residue CLA 2 603
ChainResidue
1ALA49
1CLA602
1LUT1621
2HIS68
2CLA602
2CHL607
2CHL609
2LUT1621
3CLA603

site_idAE5
Number of Residues14
Detailsbinding site for residue CLA 2 604
ChainResidue
2TRP71
2LEU74
2LEU77
2GLY78
2PHE81
2PRO82
2PHE92
2GLN103
2LEU110
2TYR112
2LEU113
2CHL606
2LUT1621
2NEX1623

site_idAE6
Number of Residues8
Detailsbinding site for residue CHL 2 605
ChainResidue
2SER117
2LEU118
2VAL119
2HIS120
2ALA121
2GLN122
2SER123
2CHL606

site_idAE7
Number of Residues11
Detailsbinding site for residue CHL 2 606
ChainResidue
2TRP71
2ALA121
2ILE127
2THR130
2GLN131
2CLA604
2CHL605
2CHL607
2CHL609
2LUT1621
2NEX1623

site_idAE8
Number of Residues13
Detailsbinding site for residue CHL 2 607
ChainResidue
1TRP222
1ALA225
1PHE228
1XAT1622
2PHE98
2GLY101
2SER102
2ILE104
2GLN131
2PHE195
2CLA603
2CHL606
2CHL609

site_idAE9
Number of Residues18
Detailsbinding site for residue CHL 2 608
ChainResidue
2ILE67
2ARG70
2TRP71
2VAL138
2TYR141
2ARG142
2GLY145
2GLY146
2PRO147
2LEU148
2GLY149
2GLU150
2PRO154
2LEU155
2PRO157
2PHE161
2CLA610
2NEX1623

site_idAF1
Number of Residues16
Detailsbinding site for residue CHL 2 609
ChainResidue
1TRP46
1THR48
1CHL601
2LEU64
2ILE67
2HIS68
2TRP71
2GLN131
2MET135
2GLY136
2GLU139
2ARG142
2ILE143
2CLA603
2CHL606
2CHL607

site_idAF2
Number of Residues14
Detailsbinding site for residue CLA 2 610
ChainResidue
2ARG70
2MET73
2TYR156
2PRO157
2GLY158
2PHE161
2LEU166
2PHE173
2LEU176
2LYS177
2GLU180
2CHL608
2CLA612
2LUT1620

site_idAF3
Number of Residues9
Detailsbinding site for residue CLA 2 611
ChainResidue
2TRP16
2GLU175
2VAL178
2LYS179
2LYS182
2ASN183
2CLA612
2XAT1622
2LHG2630

site_idAF4
Number of Residues6
Detailsbinding site for residue CLA 2 612
ChainResidue
2LYS179
2ASN183
2LEU186
2CLA610
2CLA611
2LUT1620

site_idAF5
Number of Residues13
Detailsbinding site for residue CLA 2 613
ChainResidue
2SER190
2GLY193
2VAL196
2GLN197
2THR201
2ASN208
2HIS212
2ASN219
2ASN220
2ALA221
2CLA614
2LUT1620
2XAT1622

site_idAF6
Number of Residues5
Detailsbinding site for residue CLA 2 614
ChainResidue
2HIS212
2LEU213
2PRO216
2TRP222
2CLA613

site_idAF7
Number of Residues12
Detailsbinding site for residue LUT 2 1620
ChainResidue
2MET73
2PHE161
2ASP162
2PRO163
2LEU164
2SER190
2PHE194
2PRO205
2ASN208
2CLA610
2CLA612
2CLA613

site_idAF8
Number of Residues18
Detailsbinding site for residue LUT 2 1621
ChainResidue
2TRP46
2ASP47
2THR48
2ALA49
2GLY75
2GLY78
2CYS79
2TRP97
2ALA100
2MET188
2MET191
2PHE192
2CLA602
2CLA603
2CLA604
2CHL606
3CLA603
3CHL609

site_idAF9
Number of Residues11
Detailsbinding site for residue XAT 2 1622
ChainResidue
2ALA221
2TRP222
2ALA225
2ASN227
2CHL601
2CLA611
2CLA613
2LHG2630
3ILE142
3CHL607
3CHL609

site_idAG1
Number of Residues6
Detailsbinding site for residue NEX 2 1623
ChainResidue
2TYR112
2LEU134
2TYR141
2CLA604
2CHL606
2CHL608

site_idAG2
Number of Residues7
Detailsbinding site for residue LHG 2 2630
ChainResidue
2TYR44
2LYS182
2LEU186
2PHE189
2CHL601
2CLA611
2XAT1622

site_idAG3
Number of Residues14
Detailsbinding site for residue CHL 3 601
ChainResidue
1CHL607
1CHL609
3VAL31
3LYS32
3TYR33
3LEU34
3GLY35
3PRO36
3PHE37
3TYR53
3TRP55
3CLA602
3XAT1622
3LHG2630

site_idAG4
Number of Residues20
Detailsbinding site for residue CLA 3 602
ChainResidue
3LEU45
3PRO50
3GLY51
3ASP52
3TYR53
3GLY54
3TRP55
3ASP56
3LEU60
3SER61
3ASN70
3ARG71
3GLU74
3HIS77
3ARG196
3MET199
3PHE203
3CHL601
3CLA603
3LUT1621

site_idAG5
Number of Residues10
Detailsbinding site for residue CLA 3 603
ChainResidue
2CLA603
2LUT1621
3ASN70
3LEU73
3HIS77
3PHE203
3PHE206
3CLA602
3CHL609
3LUT1621

site_idAG6
Number of Residues12
Detailsbinding site for residue CLA 3 604
ChainResidue
3TRP80
3LEU83
3GLY87
3PHE102
3GLU104
3GLN113
3LEU120
3TYR122
3LEU123
3CHL606
3LUT1621
3NEX1623

site_idAG7
Number of Residues9
Detailsbinding site for residue CHL 3 605
ChainResidue
3PRO126
3ASN127
3LEU128
3VAL129
3HIS130
3ALA131
3GLN132
3SER133
3CHL606

site_idAG8
Number of Residues10
Detailsbinding site for residue CHL 3 606
ChainResidue
3TRP80
3ALA131
3VAL137
3GLN141
3CLA604
3CHL605
3CHL607
3CHL609
3LUT1621
3NEX1623

site_idAG9
Number of Residues15
Detailsbinding site for residue CHL 3 607
ChainResidue
2TRP222
2ALA225
2PHE228
2VAL229
2XAT1622
3PHE108
3LYS109
3GLY111
3SER112
3ILE114
3LEU138
3GLN141
3CHL606
3CHL609
3LUT1621

site_idAH1
Number of Residues14
Detailsbinding site for residue CHL 3 608
ChainResidue
3ILE76
3ARG79
3TRP80
3VAL148
3PHE151
3ARG152
3GLY155
3LEU156
3VAL159
3GLY160
3LEU165
3PHE172
3CLA610
3NEX1623

site_idAH2
Number of Residues16
Detailsbinding site for residue CHL 3 609
ChainResidue
2TRP46
2THR48
2CHL601
2LUT1621
2XAT1622
3LEU73
3HIS77
3TRP80
3GLN141
3MET145
3GLY146
3GLU149
3ARG152
3CLA603
3CHL606
3CHL607

site_idAH3
Number of Residues13
Detailsbinding site for residue CLA 3 610
ChainResidue
3ARG79
3MET82
3TYR166
3PRO167
3GLY168
3PHE172
3PHE184
3LEU187
3LYS188
3GLU191
3CHL608
3CLA612
3LUT1620

site_idAH4
Number of Residues9
Detailsbinding site for residue CLA 3 611
ChainResidue
3TRP25
3LYS190
3LYS193
3ASN194
3CLA612
3XAT1622
3LHG2630
4TRP130
4SER131

site_idAH5
Number of Residues6
Detailsbinding site for residue CLA 3 612
ChainResidue
3LYS190
3ASN194
3LEU197
3CLA610
3CLA611
3LUT1620

site_idAH6
Number of Residues15
Detailsbinding site for residue CLA 3 613
ChainResidue
3PHE200
3SER201
3GLY204
3VAL207
3GLN208
3THR212
3ASN219
3HIS223
3ASN230
3ASN231
3ALA232
3TYR235
3CLA614
3LUT1620
3XAT1622

site_idAH7
Number of Residues10
Detailsbinding site for residue CLA 3 614
ChainResidue
1LEU125
1TRP128
3HIS223
3LEU224
3PRO227
3ASN231
3TRP233
3CLA613
3LUT1620
3XAT1622

site_idAH8
Number of Residues14
Detailsbinding site for residue LUT 3 1620
ChainResidue
3MET82
3ALA85
3PHE172
3ASP173
3PRO174
3ASN194
3SER201
3PHE205
3GLN208
3PRO216
3CLA610
3CLA612
3CLA613
3CLA614

site_idAH9
Number of Residues19
Detailsbinding site for residue LUT 3 1621
ChainResidue
3TRP55
3ASP56
3THR57
3ALA58
3HIS77
3ALA81
3GLY84
3GLY87
3CYS88
3TRP107
3ALA110
3MET199
3MET202
3PHE203
3CLA602
3CLA603
3CLA604
3CHL606
3CHL607

site_idAI1
Number of Residues13
Detailsbinding site for residue XAT 3 1622
ChainResidue
1TRP128
1CHL607
1CHL609
3ALA232
3TRP233
3TYR235
3ALA236
3PHE239
3CHL601
3CLA611
3CLA613
3CLA614
3LHG2630

site_idAI2
Number of Residues7
Detailsbinding site for residue NEX 3 1623
ChainResidue
3TRP80
3TYR122
3PHE151
3LEU156
3CLA604
3CHL606
3CHL608

site_idAI3
Number of Residues6
Detailsbinding site for residue LHG 3 2630
ChainResidue
3TYR53
3LYS193
3PHE200
3CHL601
3CLA611
3XAT1622

site_idAI4
Number of Residues6
Detailsbinding site for residue CHL 4 601
ChainResidue
4LYS7
4SER8
4TRP9
4ILE10
4CLA602
4LHG2630

site_idAI5
Number of Residues15
Detailsbinding site for residue CLA 4 602
ChainResidue
4LEU25
4GLY31
4ASP32
4PHE33
4GLY34
4PHE35
4LEU40
4GLY41
4TYR50
4ARG51
4GLU54
4ARG185
4MET188
4CHL601
4XAT622

site_idAI6
Number of Residues6
Detailsbinding site for residue CLA 4 603
ChainResidue
4TYR50
4HIS57
4TYR195
4CHL607
4CHL609
4XAT622

site_idAI7
Number of Residues10
Detailsbinding site for residue CLA 4 604
ChainResidue
4TRP60
4GLY67
4VAL70
4GLY71
4TRP74
4SER75
4ASP85
4CHL606
4XAT622
4BCR623

site_idAI8
Number of Residues8
Detailsbinding site for residue CHL 4 606
ChainResidue
4ALA88
4PHE92
4LEU97
4GLN101
4CLA604
4CHL607
4CHL609
4BCR623

site_idAI9
Number of Residues10
Detailsbinding site for residue CHL 4 607
ChainResidue
4PHE80
4GLU81
4GLY83
4ALA84
4LEU97
4GLN101
4TYR195
4CLA603
4CHL606
4XAT622

site_idAJ1
Number of Residues12
Detailsbinding site for residue CHL 4 608
ChainResidue
4ILE56
4ARG59
4TRP60
4VAL108
4LYS111
4ARG112
4ASP115
4PHE137
4PHE151
4PHE152
4CLA610
4BCR623

site_idAJ2
Number of Residues14
Detailsbinding site for residue CHL 4 609
ChainResidue
4TRP49
4ALA53
4ILE56
4HIS57
4TRP60
4GLN101
4LEU102
4MET105
4GLY106
4GLU109
4ARG112
4TRP113
4CLA603
4CHL606

site_idAJ3
Number of Residues13
Detailsbinding site for residue CLA 4 610
ChainResidue
4ARG59
4MET62
4TYR146
4PRO147
4PHE152
4ASP153
4LEU157
4LEU176
4LYS177
4GLU180
4CHL608
4CLA612
4LUT620

site_idAJ4
Number of Residues5
Detailsbinding site for residue CLA 4 611
ChainResidue
4ALA179
4LYS182
4HIS183
4CLA612
4LHG2630

site_idAJ5
Number of Residues5
Detailsbinding site for residue CLA 4 612
ChainResidue
4ARG175
4HIS183
4CLA610
4CLA611
4LUT620

site_idAJ6
Number of Residues13
Detailsbinding site for residue LUT 4 620
ChainResidue
4MET62
4VAL65
4PHE152
4ASP153
4PRO154
4LEU155
4SER156
4LEU157
4ALA190
4ILE193
4PHE194
4CLA610
4CLA612

site_idAJ7
Number of Residues14
Detailsbinding site for residue XAT 4 622
ChainResidue
4PHE35
4ASP36
4PRO37
4LEU38
4HIS57
4ALA64
4TRP79
4ALA82
4MET188
4TYR195
4CLA602
4CLA603
4CLA604
4CHL607

site_idAJ8
Number of Residues6
Detailsbinding site for residue BCR 4 623
ChainResidue
4MET105
4TRP107
4PRO129
4CLA604
4CHL606
4CHL608

site_idAJ9
Number of Residues3
Detailsbinding site for residue LHG 4 2630
ChainResidue
4LYS182
4CHL601
4CLA611

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues120
DetailsTRANSMEM: Helical => ECO:0000255
ChainResidueDetails
1VAL66-SER86
1LEU118-VAL138
1LEU186-LEU206
2VAL66-SER86
2LEU118-VAL138
2LEU186-LEU206

site_idSWS_FT_FI2
Number of Residues18
DetailsBINDING: axial binding residue => ECO:0000250|UniProtKB:P12333
ChainResidueDetails
1TYR24
2TYR24
2GLU65
2HIS68
2VAL119
2GLU139
2GLU180
2ASN183
2GLN197
2HIS212
1GLU65
1HIS68
1VAL119
1GLU139
1GLU180
1ASN183
1GLN197
1HIS212

site_idSWS_FT_FI3
Number of Residues24
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
1TRP46
1ARG185
1ALA221
1PHE228
2TRP46
2SER52
2ARG70
2GLN103
2LEU113
2SER123
2ARG142
1SER52
2LEU148
2LYS179
2ARG185
2ALA221
2PHE228
1ARG70
1GLN103
1LEU113
1SER123
1ARG142
1LEU148
1LYS179

site_idSWS_FT_FI4
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P07371
ChainResidueDetails
1GLN131
2GLN131

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N2-acetylarginine => ECO:0000250
ChainResidueDetails
1ARG1
2ARG1

226707

PDB entries from 2024-10-30

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