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Crystal Structure of the Gemin2-binding domain of SMN, Gemin2dN39 in Complex with SmD1(1-82)/D2/F/E from Human

Functional Information from GO Data
ChainGOidnamespacecontents
20000245biological_processspliceosomal complex assembly
20000387biological_processspliceosomal snRNP assembly
20005681cellular_componentspliceosomal complex
A0000387biological_processspliceosomal snRNP assembly
A0003723molecular_functionRNA binding
A0006396biological_processRNA processing
B0000245biological_processspliceosomal complex assembly
B0000387biological_processspliceosomal snRNP assembly
B0000398biological_processmRNA splicing, via spliceosome
B0003723molecular_functionRNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005654cellular_componentnucleoplasm
B0005681cellular_componentspliceosomal complex
B0005682cellular_componentU5 snRNP
B0005684cellular_componentU2-type spliceosomal complex
B0005685cellular_componentU1 snRNP
B0005686cellular_componentU2 snRNP
B0005687cellular_componentU4 snRNP
B0005689cellular_componentU12-type spliceosomal complex
B0005737cellular_componentcytoplasm
B0005829cellular_componentcytosol
B0006397biological_processmRNA processing
B0008380biological_processRNA splicing
B0030532cellular_componentsmall nuclear ribonucleoprotein complex
B0034709cellular_componentmethylosome
B0034715cellular_componentpICln-Sm protein complex
B0034719cellular_componentSMN-Sm protein complex
B0036261biological_process7-methylguanosine cap hypermethylation
B0046540cellular_componentU4/U6 x U5 tri-snRNP complex
B0070062cellular_componentextracellular exosome
B0071005cellular_componentU2-type precatalytic spliceosome
B0071007cellular_componentU2-type catalytic step 2 spliceosome
B0071011cellular_componentprecatalytic spliceosome
B0071013cellular_componentcatalytic step 2 spliceosome
B1903241biological_processU2-type prespliceosome assembly
E0000245biological_processspliceosomal complex assembly
E0000387biological_processspliceosomal snRNP assembly
E0000398biological_processmRNA splicing, via spliceosome
E0003723molecular_functionRNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005654cellular_componentnucleoplasm
E0005681cellular_componentspliceosomal complex
E0005682cellular_componentU5 snRNP
E0005683cellular_componentU7 snRNP
E0005684cellular_componentU2-type spliceosomal complex
E0005685cellular_componentU1 snRNP
E0005686cellular_componentU2 snRNP
E0005687cellular_componentU4 snRNP
E0005689cellular_componentU12-type spliceosomal complex
E0005697cellular_componenttelomerase holoenzyme complex
E0005737cellular_componentcytoplasm
E0005829cellular_componentcytosol
E0006397biological_processmRNA processing
E0008380biological_processRNA splicing
E0030532cellular_componentsmall nuclear ribonucleoprotein complex
E0034709cellular_componentmethylosome
E0034715cellular_componentpICln-Sm protein complex
E0034719cellular_componentSMN-Sm protein complex
E0036261biological_process7-methylguanosine cap hypermethylation
E0043229cellular_componentintracellular organelle
E0046540cellular_componentU4/U6 x U5 tri-snRNP complex
E0071005cellular_componentU2-type precatalytic spliceosome
E0071007cellular_componentU2-type catalytic step 2 spliceosome
E0071011cellular_componentprecatalytic spliceosome
E0071013cellular_componentcatalytic step 2 spliceosome
E1903241biological_processU2-type prespliceosome assembly
F0000387biological_processspliceosomal snRNP assembly
F0000398biological_processmRNA splicing, via spliceosome
F0003723molecular_functionRNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005654cellular_componentnucleoplasm
F0005681cellular_componentspliceosomal complex
F0005682cellular_componentU5 snRNP
F0005683cellular_componentU7 snRNP
F0005684cellular_componentU2-type spliceosomal complex
F0005685cellular_componentU1 snRNP
F0005686cellular_componentU2 snRNP
F0005687cellular_componentU4 snRNP
F0005689cellular_componentU12-type spliceosomal complex
F0005737cellular_componentcytoplasm
F0005829cellular_componentcytosol
F0006397biological_processmRNA processing
F0008380biological_processRNA splicing
F0030532cellular_componentsmall nuclear ribonucleoprotein complex
F0034709cellular_componentmethylosome
F0034715cellular_componentpICln-Sm protein complex
F0034719cellular_componentSMN-Sm protein complex
F0036261biological_process7-methylguanosine cap hypermethylation
F0046540cellular_componentU4/U6 x U5 tri-snRNP complex
F0071005cellular_componentU2-type precatalytic spliceosome
F0071007cellular_componentU2-type catalytic step 2 spliceosome
F0071013cellular_componentcatalytic step 2 spliceosome
F0120114cellular_componentSm-like protein family complex
F1903241biological_processU2-type prespliceosome assembly
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19369195, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
MSER28

site_idSWS_FT_FI2
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:17487921, ECO:0007744|PubMed:18669648, ECO:0007744|PubMed:18691976, ECO:0007744|PubMed:19369195, ECO:0007744|PubMed:19690332, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163, ECO:0007744|PubMed:24275569
ChainResidueDetails
MSER31

site_idSWS_FT_FI3
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
MLYS51

site_idSWS_FT_FI4
Number of Residues3
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733
ChainResidueDetails
BLYS8
BLYS6

221051

PDB entries from 2024-06-12

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