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5XJ2

Structure of spRlmCD with U747 RNA

Functional Information from GO Data
ChainGOidnamespacecontents
A0006396biological_processRNA processing
A0008173molecular_functionRNA methyltransferase activity
B0006396biological_processRNA processing
B0008173molecular_functionRNA methyltransferase activity
C0006396biological_processRNA processing
C0008173molecular_functionRNA methyltransferase activity
D0006396biological_processRNA processing
D0008173molecular_functionRNA methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue ZN A 501
ChainResidue
AHIS17
AARG384
AHIS440

site_idAC2
Number of Residues13
Detailsbinding site for residue SAH A 502
ChainResidue
ALEU334
AILE335
AASP359
ATHR360
AALA361
AASP381
AHOH602
ATYR293
ATYR312
ASER313
AGLY314
ATHR317
AGLU333

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BHIS17
BARG384
BHIS440
BHIS441

site_idAC4
Number of Residues13
Detailsbinding site for residue SAH B 502
ChainResidue
BPHE281
BTYR293
BTYR312
BSER313
BGLY314
BILE315
BTHR317
BGLU333
BLEU334
BILE335
BALA361
BGLU362
BASP381

site_idAC5
Number of Residues2
Detailsbinding site for residue ZN C 501
ChainResidue
CHIS17
CARG384

site_idAC6
Number of Residues12
Detailsbinding site for residue SAH C 502
ChainResidue
CPHE281
CTYR293
CTYR312
CSER313
CTHR317
CGLU333
CLEU334
CILE335
CASP359
CTHR360
CALA361
CASP381

site_idAC7
Number of Residues3
Detailsbinding site for residue ZN D 501
ChainResidue
DHIS17
DARG384
DHIS440

site_idAC8
Number of Residues14
Detailsbinding site for residue SAH D 502
ChainResidue
DPHE281
DTYR293
DTYR312
DSER313
DGLY314
DTHR317
DILE318
DGLU333
DLEU334
DILE335
DASP359
DTHR360
DALA361
DASP381

Functional Information from PROSITE/UniProt
site_idPS01230
Number of Residues32
DetailsTRMA_1 RNA methyltransferase trmA family signature 1. DPPRkGltesfikasaqtgadr...IAYiSCNvaT
ChainResidueDetails
AASP381-THR412

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues116
DetailsDomain: {"description":"TRAM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00208","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU01024","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01024","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

240971

PDB entries from 2025-08-27

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