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5XII

Crystal Structure of Toxoplasma gondii Prolyl-tRNA Synthetase (TgPRS) in complex with inhibitor 6

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0004812molecular_functionaminoacyl-tRNA ligase activity
A0004827molecular_functionproline-tRNA ligase activity
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006418biological_processtRNA aminoacylation for protein translation
A0006433biological_processprolyl-tRNA aminoacylation
B0000166molecular_functionnucleotide binding
B0004812molecular_functionaminoacyl-tRNA ligase activity
B0004827molecular_functionproline-tRNA ligase activity
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006418biological_processtRNA aminoacylation for protein translation
B0006433biological_processprolyl-tRNA aminoacylation
C0000166molecular_functionnucleotide binding
C0004812molecular_functionaminoacyl-tRNA ligase activity
C0004827molecular_functionproline-tRNA ligase activity
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006418biological_processtRNA aminoacylation for protein translation
C0006433biological_processprolyl-tRNA aminoacylation
D0000166molecular_functionnucleotide binding
D0004812molecular_functionaminoacyl-tRNA ligase activity
D0004827molecular_functionproline-tRNA ligase activity
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006418biological_processtRNA aminoacylation for protein translation
D0006433biological_processprolyl-tRNA aminoacylation
Functional Information from PDB Data
site_idAC1
Number of Residues23
Detailsbinding site for residue ANP A 1001
ChainResidue
AARG470
AMG1003
A86X1004
AHOH1107
AHOH1109
AHOH1116
AHOH1150
AHOH1158
AHOH1178
AHOH1179
AHOH1183
AGLU472
AHOH1193
AHOH1214
AHOH1216
AHOH1243
AARG481
ATHR482
APHE485
AGLN555
ATHR592
AARG594
AMG1002

site_idAC2
Number of Residues5
Detailsbinding site for residue MG A 1002
ChainResidue
AANP1001
AHOH1116
AHOH1179
AHOH1231
AHOH1307

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 1003
ChainResidue
AANP1001
AHOH1107
AHOH1150
AHOH1158
AHOH1178

site_idAC4
Number of Residues16
Detailsbinding site for residue 86X A 1004
ChainResidue
APHE415
AGLU418
AVAL419
APRO438
ATHR439
AGLU441
AARG470
ATRP487
APHE534
ATHR558
AHIS560
ASER588
ATRP589
AANP1001
AHOH1158
AHOH1280

site_idAC5
Number of Residues2
Detailsbinding site for residue EDO A 1005
ChainResidue
AGLU497
ALYS539

site_idAC6
Number of Residues8
Detailsbinding site for residue EDO A 1006
ChainResidue
AILE800
APRO801
APHE802
AARG822
AHOH1125
AHOH1129
AHOH1286
DPRO429

site_idAC7
Number of Residues2
Detailsbinding site for residue EDO A 1007
ChainResidue
AGLU376
ALYS377

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 1008
ChainResidue
AARG582
ALEU583
AHOH1238

site_idAC9
Number of Residues2
Detailsbinding site for residue EDO A 1009
ChainResidue
ACYS518
AARG614

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 1010
ChainResidue
ATRP471
AARG483
CLEU430

site_idAD2
Number of Residues26
Detailsbinding site for residue ANP B 1001
ChainResidue
BARG470
BGLU472
BLYS474
BPHE479
BLEU480
BARG481
BTHR482
BPHE485
BGLN555
BALA556
BALA557
BTHR558
BTHR592
BARG594
BMG1002
BMG1003
B86X1004
BHOH1122
BHOH1129
BHOH1139
BHOH1141
BHOH1148
BHOH1190
BHOH1192
BHOH1200
BHOH1202

site_idAD3
Number of Residues5
Detailsbinding site for residue MG B 1002
ChainResidue
BHOH1237
BANP1001
BHOH1122
BHOH1192
BHOH1202

site_idAD4
Number of Residues5
Detailsbinding site for residue MG B 1003
ChainResidue
BANP1001
BHOH1116
BHOH1129
BHOH1139
BHOH1141

site_idAD5
Number of Residues16
Detailsbinding site for residue 86X B 1004
ChainResidue
BPHE415
BGLU418
BVAL419
BPRO438
BTHR439
BGLU441
BARG470
BTRP487
BHIS491
BPHE534
BTHR558
BHIS560
BTRP589
BANP1001
BHOH1116
BHOH1212

site_idAD6
Number of Residues1
Detailsbinding site for residue EDO B 1005
ChainResidue
BLYS377

site_idAD7
Number of Residues3
Detailsbinding site for residue EDO B 1006
ChainResidue
BPHE381
BGLU517
BARG614

site_idAD8
Number of Residues5
Detailsbinding site for residue EDO B 1007
ChainResidue
BGLU527
BILE800
BPRO801
BPHE802
BARG822

site_idAD9
Number of Residues1
Detailsbinding site for residue CL B 1009
ChainResidue
BPHE473

site_idAE1
Number of Residues22
Detailsbinding site for residue ANP C 1001
ChainResidue
CARG470
CGLU472
CPHE479
CLEU480
CARG481
CTHR482
CPHE485
CGLN555
CTHR558
CTHR592
CARG594
CMG1002
CMG1003
C86X1004
CHOH1104
CHOH1112
CHOH1120
CHOH1125
CHOH1140
CHOH1148
CHOH1153
CHOH1196

site_idAE2
Number of Residues2
Detailsbinding site for residue MG C 1002
ChainResidue
CANP1001
CHOH1196

site_idAE3
Number of Residues5
Detailsbinding site for residue MG C 1003
ChainResidue
CANP1001
CHOH1120
CHOH1125
CHOH1140
CHOH1153

site_idAE4
Number of Residues13
Detailsbinding site for residue 86X C 1004
ChainResidue
CPHE415
CGLU418
CVAL419
CPRO438
CTHR439
CGLU441
CARG470
CTRP487
CPHE534
CTHR558
CHIS560
CANP1001
CHOH1140

site_idAE5
Number of Residues23
Detailsbinding site for residue ANP D 1001
ChainResidue
DARG470
DGLU472
DPHE479
DLEU480
DARG481
DTHR482
DPHE485
DGLN555
DTHR558
DTHR592
DARG594
DMG1002
DMG1003
D86X1004
DHOH1101
DHOH1120
DHOH1128
DHOH1132
DHOH1134
DHOH1179
DHOH1183
DHOH1191
DHOH1197

site_idAE6
Number of Residues4
Detailsbinding site for residue MG D 1002
ChainResidue
DANP1001
DHOH1183
DHOH1227
DHOH1236

site_idAE7
Number of Residues6
Detailsbinding site for residue MG D 1003
ChainResidue
DARG470
DANP1001
DHOH1101
DHOH1132
DHOH1134
DHOH1179

site_idAE8
Number of Residues16
Detailsbinding site for residue 86X D 1004
ChainResidue
DPHE415
DGLU418
DVAL419
DPRO438
DTHR439
DGLU441
DARG470
DTRP487
DHIS491
DPHE534
DTHR558
DHIS560
DSER588
DTRP589
DANP1001
DHOH1179

site_idAE9
Number of Residues3
Detailsbinding site for residue EDO D 1005
ChainResidue
DARG582
DLEU583
DHOH1198

site_idAF1
Number of Residues2
Detailsbinding site for residue EDO D 1006
ChainResidue
DSER362
DHOH1107

site_idAF2
Number of Residues1
Detailsbinding site for residue CL D 1008
ChainResidue
DASP650

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PDB entries from 2024-06-12

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