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5XFQ

Ternary complex of PHF1, a DNA duplex and a histone peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0006974biological_processcellular response to DNA damage stimulus
A0031060biological_processregulation of histone methylation
A0035064molecular_functionmethylated histone binding
B0006974biological_processcellular response to DNA damage stimulus
B0031060biological_processregulation of histone methylation
B0035064molecular_functionmethylated histone binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS90
ACYS93
AHIS115
ACYS118

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 402
ChainResidue
ACYS107
ACYS110
ACYS136
ACYS139

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 403
ChainResidue
ACYS191
AHIS212
ACYS215
ACYS189

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 404
ChainResidue
ACYS204
ACYS207
ACYS234
ACYS237

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS189
BCYS191
BHIS212
BCYS215

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 402
ChainResidue
BCYS204
BCYS207
BCYS234
BCYS237

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 403
ChainResidue
BCYS90
BCYS93
BHIS115
BCYS118

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 404
ChainResidue
BCYS107
BCYS110
BCYS136
BCYS139

Functional Information from PROSITE/UniProt
site_idPS01359
Number of Residues50
DetailsZF_PHD_1 Zinc finger PHD-type signature. CcvCrsetvvpgnrl..................................VsCek..Crha.YHqdChvprapapgegegas..............................WvCrqC
ChainResidueDetails
ACYS90-CYS139
ACYS189-CYS237

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15983376, ECO:0000269|PubMed:16185088, ECO:0000269|PubMed:16267050, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:17194708
ChainResidueDetails
EM3L36
FM3L36

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: N6-methyllysine => ECO:0000269|PubMed:15983376
ChainResidueDetails
ELYS37
FLYS37

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0000269|PubMed:19783980
ChainResidueDetails
ETYR41
FTYR41

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PDB entries from 2024-07-24

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