Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

5XFQ

Ternary complex of PHF1, a DNA duplex and a histone peptide

Functional Information from GO Data
ChainGOidnamespacecontents
A0006974biological_processcellular response to DNA damage stimulus
A0031060biological_processregulation of histone methylation
A0035064molecular_functionmethylated histone binding
B0006974biological_processcellular response to DNA damage stimulus
B0031060biological_processregulation of histone methylation
B0035064molecular_functionmethylated histone binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS90
ACYS93
AHIS115
ACYS118

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 402
ChainResidue
ACYS107
ACYS110
ACYS136
ACYS139

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 403
ChainResidue
ACYS191
AHIS212
ACYS215
ACYS189

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 404
ChainResidue
ACYS204
ACYS207
ACYS234
ACYS237

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BCYS189
BCYS191
BHIS212
BCYS215

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 402
ChainResidue
BCYS204
BCYS207
BCYS234
BCYS237

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 403
ChainResidue
BCYS90
BCYS93
BHIS115
BCYS118

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN B 404
ChainResidue
BCYS107
BCYS110
BCYS136
BCYS139

Functional Information from PROSITE/UniProt
site_idPS01359
Number of Residues50
DetailsZF_PHD_1 Zinc finger PHD-type signature. CcvCrsetvvpgnrl..................................VsCek..Crha.YHqdChvprapapgegegas..............................WvCrqC
ChainResidueDetails
ACYS90-CYS139
ACYS189-CYS237

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues57
DetailsDomain: {"description":"Tudor"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues55
DetailsZinc finger: {"description":"PHD-type 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00146","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues108
DetailsZinc finger: {"description":"PHD-type 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00146","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"N6-methyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P68431","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

250359

PDB entries from 2026-03-11

PDB statisticsPDBj update infoContact PDBjnumon