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5XD5

Crystal structure of Mycobacterium smegmatis MutT1 in complex with ATP, magnesium fluoride and phosphate

Functional Information from GO Data
ChainGOidnamespacecontents
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0006974biological_processDNA damage response
A0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0044715molecular_function8-oxo-dGDP phosphatase activity
A0044716molecular_function8-oxo-GDP phosphatase activity
A0046872molecular_functionmetal ion binding
B0006260biological_processDNA replication
B0006281biological_processDNA repair
B0006974biological_processDNA damage response
B0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
B0016787molecular_functionhydrolase activity
B0044715molecular_function8-oxo-dGDP phosphatase activity
B0044716molecular_function8-oxo-GDP phosphatase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue ATP B 401
ChainResidue
BARG55
BASP148
BPO4402
BMG407
BMG410
BF411
BF413
BHOH578
BHOH588
BHOH595
BHOH612
BARG57
BHOH615
BHOH626
BHOH629
BHOH696
BHOH699
BTYR58
BLYS65
BLYS67
BTYR101
BLYS108
BGLU127
BTYR145

site_idAC2
Number of Residues13
Detailsbinding site for residue PO4 B 402
ChainResidue
BARG57
BLYS67
BHIS249
BLYS250
BARG253
BATP401
BMG410
BF411
BF412
BF413
BHOH531
BHOH575
BHOH653

site_idAC3
Number of Residues6
Detailsbinding site for residue GOL B 403
ChainResidue
BARG95
BTRP111
BLEU316
BHOH542
BHOH631
BHOH687

site_idAC4
Number of Residues7
Detailsbinding site for residue GOL B 404
ChainResidue
BARG184
BASP215
BARG216
BVAL217
BHIS220
BHOH507
BHOH754

site_idAC5
Number of Residues7
Detailsbinding site for residue GOL B 405
ChainResidue
BARG25
BLEU68
BASP69
BGLN70
BGLY71
BGLU72
BHOH682

site_idAC6
Number of Residues7
Detailsbinding site for residue GOL B 406
ChainResidue
BILE275
BPRO276
BGLU280
BGLY294
BASN295
BTRP301
BHOH559

site_idAC7
Number of Residues8
Detailsbinding site for residue MG B 407
ChainResidue
BLYS65
BGLU85
BGLU127
BATP401
BMG408
BMG410
BF411
BHOH588

site_idAC8
Number of Residues9
Detailsbinding site for residue MG B 408
ChainResidue
BGLU81
BGLU85
BGLU127
BMG407
BMG409
BMG410
BF411
BF412
BHOH613

site_idAC9
Number of Residues8
Detailsbinding site for residue MG B 409
ChainResidue
BGLU81
BMG408
BMG410
BF412
BF413
BHOH531
BHOH571
BHOH606

site_idAD1
Number of Residues10
Detailsbinding site for residue MG B 410
ChainResidue
BLYS67
BGLU127
BATP401
BPO4402
BMG407
BMG408
BMG409
BF411
BF412
BF413

site_idAD2
Number of Residues12
Detailsbinding site for residue F B 411
ChainResidue
BLYS65
BGLY66
BGLU81
BGLU85
BGLU127
BATP401
BPO4402
BMG407
BMG408
BMG410
BF412
BF413

site_idAD3
Number of Residues12
Detailsbinding site for residue F B 412
ChainResidue
BGLU81
BGLU127
BLYS250
BPO4402
BMG408
BMG409
BMG410
BF411
BF413
BHOH531
BHOH571
BHOH613

site_idAD4
Number of Residues11
Detailsbinding site for residue F B 413
ChainResidue
BGLY66
BLYS67
BGLU81
BATP401
BPO4402
BMG409
BMG410
BF411
BF412
BHOH531
BHOH606

site_idAD5
Number of Residues3
Detailsbinding site for residue CL B 414
ChainResidue
BHIS170
BARG186
BHOH665

site_idAD6
Number of Residues2
Detailsbinding site for residue CL B 415
ChainResidue
BTRP282
BLEU310

site_idAD7
Number of Residues3
Detailsbinding site for residue CL B 416
ChainResidue
BARG296
BLYS297
BHOH749

site_idAD8
Number of Residues18
Detailsbinding site for residue ATP A 401
ChainResidue
AARG55
ATYR58
ALYS65
ALYS67
ATYR101
ALYS108
AGLU127
ATYR145
AMG405
AMG408
AF409
AF411
AHOH509
AHOH557
AHOH564
AHOH591
AHOH601
AHOH603

site_idAD9
Number of Residues8
Detailsbinding site for residue GOL A 402
ChainResidue
AARG95
ATRP111
ATYR315
ALEU316
ASER317
AHOH562
AHOH588
AHOH598

site_idAE1
Number of Residues4
Detailsbinding site for residue GOL A 403
ChainResidue
AASP215
AARG216
AHIS220
AHOH592

site_idAE2
Number of Residues1
Detailsbinding site for residue GOL A 404
ChainResidue
AASP126

site_idAE3
Number of Residues8
Detailsbinding site for residue MG A 405
ChainResidue
ALYS65
AGLU85
AGLU127
AATP401
AMG406
AMG408
AF409
AHOH564

site_idAE4
Number of Residues9
Detailsbinding site for residue MG A 406
ChainResidue
AGLU81
AGLU85
AGLU127
AMG405
AMG407
AMG408
AF409
AF410
AHOH531

site_idAE5
Number of Residues7
Detailsbinding site for residue MG A 407
ChainResidue
AGLU81
AMG406
AMG408
AF410
AF411
AHOH515
AHOH549

site_idAE6
Number of Residues8
Detailsbinding site for residue MG A 408
ChainResidue
ALYS67
AATP401
AMG405
AMG406
AMG407
AF409
AF410
AF411

site_idAE7
Number of Residues11
Detailsbinding site for residue F A 409
ChainResidue
ALYS65
AGLY66
AGLU81
AGLU85
AGLU127
AATP401
AMG405
AMG406
AMG408
AF410
AF411

site_idAE8
Number of Residues9
Detailsbinding site for residue F A 410
ChainResidue
AGLU81
AGLU127
AMG406
AMG407
AMG408
AF409
AF411
AHOH515
AHOH531

site_idAE9
Number of Residues9
Detailsbinding site for residue F A 411
ChainResidue
AGLY66
ALYS67
AGLU81
AATP401
AMG407
AMG408
AF409
AF410
AHOH549

site_idAF1
Number of Residues3
Detailsbinding site for residue CL A 412
ChainResidue
AHIS170
AARG186
AHOH565

site_idAF2
Number of Residues4
Detailsbinding site for residue CL A 413
ChainResidue
AARG216
AGLU242
AGLU243
AGLN271

site_idAF3
Number of Residues2
Detailsbinding site for residue CL A 414
ChainResidue
AARG184
AARG216

site_idAF4
Number of Residues4
Detailsbinding site for residue CL A 415
ChainResidue
AARG296
ALYS297
AHOH648
AHOH657

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkldqgEtepvAAaREIhEEtG
ChainResidueDetails
BGLY66-GLY87

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsMotif: {"description":"Nudix box","evidences":[{"source":"PROSITE-ProRule","id":"PRU00794","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues24
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"28705712","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"28375146","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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