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5XD2

Crystal structure of Mycobacterium smegmatis MutT1 in complex with Ap5A, ATP and manganese

Functional Information from GO Data
ChainGOidnamespacecontents
A0006260biological_processDNA replication
A0006281biological_processDNA repair
A0008413molecular_function8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity
A0016787molecular_functionhydrolase activity
A0044715molecular_function8-oxo-dGDP phosphatase activity
A0044716molecular_function8-oxo-GDP phosphatase activity
A0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues24
Detailsbinding site for residue 5FA A 401
ChainResidue
AARG55
ALYS108
AGLU127
ATYR145
AASP147
AMN404
AMN405
AMN406
AHOH504
AHOH506
AHOH516
AARG57
AHOH521
AHOH559
AHOH573
AHOH661
AHOH669
ATYR58
ALYS65
AGLY66
ALYS67
AGLU81
AGLU85
ATYR101

site_idAC2
Number of Residues17
Detailsbinding site for residue ATP A 402
ChainResidue
AARG169
AHIS170
AARG175
AARG176
ASER177
ATYR179
AGLY181
AARG186
AARG218
AGLN271
AGLY272
ALYS273
ALYS297
AHOH518
AHOH524
AHOH582
AHOH601

site_idAC3
Number of Residues8
Detailsbinding site for residue GOL A 403
ChainResidue
AARG95
ATRP111
ATHR292
ATYR315
ALEU316
ASER317
AHOH514
AHOH668

site_idAC4
Number of Residues6
Detailsbinding site for residue MN A 404
ChainResidue
ALYS65
AGLU85
A5FA401
AMN405
AHOH516
AHOH555

site_idAC5
Number of Residues7
Detailsbinding site for residue MN A 405
ChainResidue
AGLU81
AGLU85
AGLU127
A5FA401
AMN404
AMN406
AHOH553

site_idAC6
Number of Residues5
Detailsbinding site for residue MN A 406
ChainResidue
AGLU81
A5FA401
AMN405
AHOH573
AHOH661

Functional Information from PROSITE/UniProt
site_idPS00893
Number of Residues22
DetailsNUDIX_BOX Nudix box signature. GkldqgEtepvAAaREIhEEtG
ChainResidueDetails
AGLY66-GLY87

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:28375146, ECO:0000269|PubMed:28705712
ChainResidueDetails
ALYS65
AGLU81
AGLU85
ATYR101
ALYS108
AGLU127
ATYR145
AARG55

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:28375146
ChainResidueDetails
AASP60

219869

PDB entries from 2024-05-15

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