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5XAA

Complete structure factors and an atomic model of the calcium pump (SERCA1A) and associated phospholipids in the E2-ALF-(TG) crystals of P21212 symmetry

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005215molecular_functiontransporter activity
A0005388molecular_functionP-type calcium transporter activity
A0005509molecular_functioncalcium ion binding
A0005524molecular_functionATP binding
A0006816biological_processcalcium ion transport
A0006874biological_processintracellular calcium ion homeostasis
A0016020cellular_componentmembrane
A0016529cellular_componentsarcoplasmic reticulum
A0016887molecular_functionATP hydrolysis activity
A0031448biological_processpositive regulation of fast-twitch skeletal muscle fiber contraction
A0033017cellular_componentsarcoplasmic reticulum membrane
A0046872molecular_functionmetal ion binding
A0070588biological_processcalcium ion transmembrane transport
A0106134biological_processpositive regulation of cardiac muscle cell contraction
A1901896biological_processpositive regulation of ATPase-coupled calcium transmembrane transporter activity
A1902082biological_processpositive regulation of calcium ion import into sarcoplasmic reticulum
A1990036biological_processcalcium ion import into sarcoplasmic reticulum
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MG A 1001
ChainResidue
AASP351
ATHR353
AASP703
AALF1002
AHOH1104
AHOH1121
AHOH1126

site_idAC2
Number of Residues15
Detailsbinding site for residue ALF A 1002
ChainResidue
AGLU183
AASP351
ALYS352
ATHR353
ATHR625
AGLY626
ALYS684
AASN706
AASP707
AMG1001
AHOH1104
AHOH1108
AHOH1121
ATHR181
AGLY182

site_idAC3
Number of Residues16
Detailsbinding site for residue TG1 A 1003
ChainResidue
ALYS252
ALEU253
AGLU255
APHE256
AGLN259
ALEU260
AVAL263
AILE765
AASN768
AVAL769
AVAL773
ALEU828
AILE829
APHE834
ATYR837
APCW1022

site_idAC4
Number of Residues3
Detailsbinding site for residue PCW A 1004
ChainResidue
ALEU49
APCW1006
APCW1023

site_idAC5
Number of Residues2
Detailsbinding site for residue PCW A 1005
ChainResidue
ASER287
ATRP288

site_idAC6
Number of Residues2
Detailsbinding site for residue PCW A 1006
ChainResidue
ATRP107
APCW1004

site_idAC7
Number of Residues2
Detailsbinding site for residue PCW A 1007
ChainResidue
APCW1023
APCW1031

site_idAC8
Number of Residues4
Detailsbinding site for residue PCW A 1008
ChainResidue
AARG63
AGLU258
ASER261
APCW1011

site_idAC9
Number of Residues4
Detailsbinding site for residue PCW A 1009
ChainResidue
ALEU992
APCW1026
APCW1028
APCW1035

site_idAD1
Number of Residues3
Detailsbinding site for residue PCW A 1011
ChainResidue
AARG63
ALEU67
APCW1008

site_idAD2
Number of Residues6
Detailsbinding site for residue PCW A 1012
ChainResidue
ATRP107
ATHR317
AARG324
AHIS868
ATHR871
APCW1027

site_idAD3
Number of Residues2
Detailsbinding site for residue PCW A 1013
ChainResidue
AGLU51
ALEU964

site_idAD4
Number of Residues3
Detailsbinding site for residue PCW A 1014
ChainResidue
AMET923
APHE986
APCW1015

site_idAD5
Number of Residues3
Detailsbinding site for residue PCW A 1015
ChainResidue
ATYR991
APCW1014
APCW1017

site_idAD6
Number of Residues1
Detailsbinding site for residue PCW A 1016
ChainResidue
APCW1017

site_idAD7
Number of Residues3
Detailsbinding site for residue PCW A 1017
ChainResidue
APCW1015
APCW1016
APCW1018

site_idAD8
Number of Residues3
Detailsbinding site for residue PCW A 1018
ChainResidue
ATRP77
APCW1017
APCW1019

site_idAD9
Number of Residues2
Detailsbinding site for residue PCW A 1019
ChainResidue
AVAL74
APCW1018

site_idAE1
Number of Residues2
Detailsbinding site for residue PCW A 1020
ChainResidue
ATRP77
APCW1035

site_idAE2
Number of Residues6
Detailsbinding site for residue PCW A 1021
ChainResidue
AGLN259
ALYS262
AVAL263
ATYR949
APCW1022
APCW1029

site_idAE3
Number of Residues4
Detailsbinding site for residue PCW A 1022
ChainResidue
AGLU255
APHE834
ATG11003
APCW1021

site_idAE4
Number of Residues5
Detailsbinding site for residue PCW A 1023
ChainResidue
AMET857
ATYR858
APCW1004
APCW1007
APCW1031

site_idAE5
Number of Residues1
Detailsbinding site for residue PCW A 1024
ChainResidue
APCW1025

site_idAE6
Number of Residues1
Detailsbinding site for residue PCW A 1025
ChainResidue
APCW1024

site_idAE7
Number of Residues4
Detailsbinding site for residue PCW A 1026
ChainResidue
AILE85
AMET955
APCW1009
APCW1028

site_idAE8
Number of Residues6
Detailsbinding site for residue PCW A 1027
ChainResidue
AILE274
AHIS278
AARG324
ATHR871
AHIS872
APCW1012

site_idAE9
Number of Residues5
Detailsbinding site for residue PCW A 1028
ChainResidue
AGLY831
ATRP832
APHE835
APCW1009
APCW1026

site_idAF1
Number of Residues3
Detailsbinding site for residue PCW A 1029
ChainResidue
ATYR949
APCW1021
APCW1030

site_idAF2
Number of Residues3
Detailsbinding site for residue PCW A 1030
ChainResidue
ALEU964
APCW1029
APCW1033

site_idAF3
Number of Residues4
Detailsbinding site for residue PCW A 1031
ChainResidue
ATYR858
AGLU860
APCW1007
APCW1023

site_idAF4
Number of Residues1
Detailsbinding site for residue PCW A 1032
ChainResidue
APCW1036

site_idAF5
Number of Residues2
Detailsbinding site for residue PCW A 1033
ChainResidue
AILE54
APCW1030

site_idAF6
Number of Residues3
Detailsbinding site for residue PCW A 1035
ChainResidue
APHE88
APCW1009
APCW1020

site_idAF7
Number of Residues1
Detailsbinding site for residue PCW A 1036
ChainResidue
APCW1032

Functional Information from PROSITE/UniProt
site_idPS00154
Number of Residues7
DetailsATPASE_E1_E2 E1-E2 ATPases phosphorylation site. DKTGTLT
ChainResidueDetails
AASP351-THR357

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues663
DetailsTOPO_DOM: Cytoplasmic => ECO:0000269|PubMed:10864315
ChainResidueDetails
AMET1-SER48
AASN111-LEU253
AVAL314-MET757
APHE809-LEU828
AGLU918-ASN930

site_idSWS_FT_FI2
Number of Residues20
DetailsTRANSMEM: Helical; Name=1 => ECO:0000269|PubMed:10864315
ChainResidueDetails
ALEU49-ALA69

site_idSWS_FT_FI3
Number of Residues108
DetailsTOPO_DOM: Lumenal => ECO:0000269|PubMed:10864315
ChainResidueDetails
ACYS70-VAL89
AILE274-TYR295
ATHR778-LEU787
AALA852-MET897
AVAL950-LEU964

site_idSWS_FT_FI4
Number of Residues20
DetailsTRANSMEM: Helical; Name=2 => ECO:0000269|PubMed:10864315
ChainResidueDetails
AGLU90-ARG110

site_idSWS_FT_FI5
Number of Residues19
DetailsTRANSMEM: Helical; Name=3 => ECO:0000269|PubMed:10864315
ChainResidueDetails
AASP254-LEU273

site_idSWS_FT_FI6
Number of Residues17
DetailsTRANSMEM: Helical; Name=4 => ECO:0000269|PubMed:10864315
ChainResidueDetails
APHE296-ALA313

site_idSWS_FT_FI7
Number of Residues19
DetailsTRANSMEM: Helical; Name=5 => ECO:0000269|PubMed:10864315
ChainResidueDetails
ALYS758-LEU777

site_idSWS_FT_FI8
Number of Residues20
DetailsTRANSMEM: Helical; Name=6 => ECO:0000269|PubMed:10864315
ChainResidueDetails
AILE788-GLY808

site_idSWS_FT_FI9
Number of Residues22
DetailsTRANSMEM: Helical; Name=7 => ECO:0000269|PubMed:10864315
ChainResidueDetails
AILE829-ALA851

site_idSWS_FT_FI10
Number of Residues19
DetailsTRANSMEM: Helical; Name=8 => ECO:0000269|PubMed:10864315
ChainResidueDetails
ATHR898-SER917

site_idSWS_FT_FI11
Number of Residues18
DetailsTRANSMEM: Helical; Name=9 => ECO:0000269|PubMed:10864315
ChainResidueDetails
AILE931-TYR949

site_idSWS_FT_FI12
Number of Residues20
DetailsTRANSMEM: Helical; Name=10 => ECO:0000269|PubMed:10864315
ChainResidueDetails
ATHR965-LYS985

site_idSWS_FT_FI13
Number of Residues1
DetailsACT_SITE: 4-aspartylphosphate intermediate => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:18075584
ChainResidueDetails
AASP351

site_idSWS_FT_FI14
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AVAL304

site_idSWS_FT_FI15
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AALA305

site_idSWS_FT_FI16
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4NAB, ECO:0007744|PDB:4XOU
ChainResidueDetails
AILE307

site_idSWS_FT_FI17
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AGLU309

site_idSWS_FT_FI18
Number of Residues3
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:1WPG, ECO:0007744|PDB:1XP5, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:2ZBE, ECO:0007744|PDB:2ZBF, ECO:0007744|PDB:2ZBG, ECO:0007744|PDB:3AR8, ECO:0007744|PDB:3AR9, ECO:0007744|PDB:3B9B, ECO:0007744|PDB:3B9R, ECO:0007744|PDB:3FGO, ECO:0007744|PDB:3FPB, ECO:0007744|PDB:3N5K, ECO:0007744|PDB:4BEW, ECO:0007744|PDB:5A3Q, ECO:0007744|PDB:5A3S
ChainResidueDetails
AASP351
ATHR353
AASP703

site_idSWS_FT_FI19
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:2BY4, ECO:0007744|PDB:2C88, ECO:0007744|PDB:2DQS, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3AR3, ECO:0007744|PDB:4UU1, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA8
ChainResidueDetails
AGLU442

site_idSWS_FT_FI20
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:1WPG, ECO:0007744|PDB:2DQS, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3B9R, ECO:0007744|PDB:3FGO, ECO:0007744|PDB:3FPB, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4BEW, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA8
ChainResidueDetails
AARG489

site_idSWS_FT_FI21
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:2BY4, ECO:0007744|PDB:2C8K, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4UU1, ECO:0007744|PDB:4XOU
ChainResidueDetails
ALYS515

site_idSWS_FT_FI22
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2BY4, ECO:0007744|PDB:2C88, ECO:0007744|PDB:2C8K, ECO:0007744|PDB:2DQS, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3B9R, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4H1W, ECO:0007744|PDB:4UU1, ECO:0007744|PDB:4XOU
ChainResidueDetails
AARG560

site_idSWS_FT_FI23
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA8
ChainResidueDetails
ATHR625

site_idSWS_FT_FI24
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4UU1, ECO:0007744|PDB:4XOU
ChainResidueDetails
AGLY626

site_idSWS_FT_FI25
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0007744|PDB:1T5T
ChainResidueDetails
AASP627

site_idSWS_FT_FI26
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3FGO, ECO:0007744|PDB:3FPB, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4BEW, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA8
ChainResidueDetails
AARG678

site_idSWS_FT_FI27
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4XOU
ChainResidueDetails
ALYS684

site_idSWS_FT_FI28
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4XOU
ChainResidueDetails
AASN706

site_idSWS_FT_FI29
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4NAB, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AASN768
ATHR799

site_idSWS_FT_FI30
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AGLU771

site_idSWS_FT_FI31
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AASN796

site_idSWS_FT_FI32
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5T, ECO:0007744|PDB:1VFP, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:2ZBD, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:3N8G, ECO:0007744|PDB:4NAB, ECO:0007744|PDB:4XOU, ECO:0007744|PDB:5XA7, ECO:0007744|PDB:5XA8
ChainResidueDetails
AASP800

site_idSWS_FT_FI33
Number of Residues1
DetailsBINDING: BINDING => ECO:0000269|PubMed:10864315, ECO:0000269|PubMed:15192230, ECO:0000269|PubMed:15229613, ECO:0000269|PubMed:26175901, ECO:0007744|PDB:1SU4, ECO:0007744|PDB:1T5S, ECO:0007744|PDB:2C9M, ECO:0007744|PDB:3AR2, ECO:0007744|PDB:3BA6, ECO:0007744|PDB:4NAB, ECO:0007744|PDB:4XOU
ChainResidueDetails
AGLU908

site_idSWS_FT_FI34
Number of Residues2
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q64578
ChainResidueDetails
ATHR441
ATHR569

site_idSWS_FT_FI35
Number of Residues1
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q64578
ChainResidueDetails
ASER581

Catalytic Information from CSA
site_idMCSA1
Number of Residues3
DetailsM-CSA 849
ChainResidueDetails
AASP351covalent catalysis
AASP703metal ligand
AASP707metal ligand

223166

PDB entries from 2024-07-31

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