5X1N
Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0016740 | molecular_function | transferase activity |
| A | 0032259 | biological_process | methylation |
| A | 0046274 | biological_process | lignin catabolic process |
| B | 0008168 | molecular_function | methyltransferase activity |
| B | 0016740 | molecular_function | transferase activity |
| B | 0032259 | biological_process | methylation |
| B | 0046274 | biological_process | lignin catabolic process |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 18 |
| Details | binding site for residue THG A 501 |
| Chain | Residue |
| A | GLN57 |
| A | PHE189 |
| A | GLU215 |
| A | TRP256 |
| A | PHE312 |
| A | DHB502 |
| A | HOH635 |
| A | HOH652 |
| A | HOH703 |
| A | HOH738 |
| A | MET61 |
| A | LYS92 |
| A | GLN93 |
| A | ILE108 |
| A | PHE110 |
| A | VAL120 |
| A | GLN165 |
| A | PHE188 |
| site_id | AC2 |
| Number of Residues | 9 |
| Details | binding site for residue DHB A 502 |
| Chain | Residue |
| A | TYR31 |
| A | HIS60 |
| A | ARG122 |
| A | TYR247 |
| A | ASN250 |
| A | TRP256 |
| A | PRO258 |
| A | THG501 |
| A | HOH618 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue EDO A 503 |
| Chain | Residue |
| A | GLY289 |
| A | ASN371 |
| A | TYR372 |
| A | ASN376 |
| A | ASP378 |
| A | HOH621 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue EDO A 504 |
| Chain | Residue |
| A | LEU261 |
| A | TYR265 |
| A | TYR282 |
| A | GLY286 |
| A | ALA287 |
| A | ASN374 |
| A | THR375 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | binding site for residue TRS A 505 |
| Chain | Residue |
| A | GLY428 |
| A | GLY429 |
| A | THR430 |
| A | ARG431 |
| A | VAL435 |
| A | GLU436 |
| A | PRO437 |
| A | HOH687 |
| B | HOH724 |
| site_id | AC6 |
| Number of Residues | 18 |
| Details | binding site for residue THG B 501 |
| Chain | Residue |
| B | GLN57 |
| B | MET61 |
| B | LYS92 |
| B | GLN93 |
| B | ILE108 |
| B | PHE110 |
| B | VAL120 |
| B | GLN165 |
| B | PHE188 |
| B | PHE189 |
| B | HIS206 |
| B | GLU215 |
| B | TRP256 |
| B | PHE312 |
| B | DHB502 |
| B | HOH617 |
| B | HOH670 |
| B | HOH751 |
| site_id | AC7 |
| Number of Residues | 9 |
| Details | binding site for residue DHB B 502 |
| Chain | Residue |
| B | TYR31 |
| B | HIS60 |
| B | ARG122 |
| B | TYR247 |
| B | ASN250 |
| B | TRP256 |
| B | PRO258 |
| B | THG501 |
| B | HOH619 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue EDO B 503 |
| Chain | Residue |
| B | GLY289 |
| B | GLY290 |
| B | ASN371 |
| B | TYR372 |
| B | ASN376 |
| B | ASP378 |
| B | HOH629 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue EDO B 504 |
| Chain | Residue |
| B | LEU261 |
| B | TYR265 |
| B | TYR282 |
| B | GLY286 |
| B | ALA287 |
| B | ASN374 |
| B | THR375 |
| site_id | AD1 |
| Number of Residues | 8 |
| Details | binding site for residue TRS B 505 |
| Chain | Residue |
| B | GLY428 |
| B | THR430 |
| B | ARG431 |
| B | LYS432 |
| B | VAL435 |
| B | GLU436 |
| B | PRO437 |
| B | HOH739 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"28429420","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Site: {"description":"Important for activity","evidences":[{"source":"PubMed","id":"28429420","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Site: {"description":"Important for activity","evidences":[{"source":"PubMed","id":"28373573","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"28429420","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
