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5X1N

Vanillate/3-O-methylgallate O-demethylase, LigM, protocatechuate-tetrahydrofolate complex form

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0046274biological_processlignin catabolic process
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0046274biological_processlignin catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues18
Detailsbinding site for residue THG A 501
ChainResidue
AGLN57
APHE189
AGLU215
ATRP256
APHE312
ADHB502
AHOH635
AHOH652
AHOH703
AHOH738
AMET61
ALYS92
AGLN93
AILE108
APHE110
AVAL120
AGLN165
APHE188

site_idAC2
Number of Residues9
Detailsbinding site for residue DHB A 502
ChainResidue
ATYR31
AHIS60
AARG122
ATYR247
AASN250
ATRP256
APRO258
ATHG501
AHOH618

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 503
ChainResidue
AGLY289
AASN371
ATYR372
AASN376
AASP378
AHOH621

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 504
ChainResidue
ALEU261
ATYR265
ATYR282
AGLY286
AALA287
AASN374
ATHR375

site_idAC5
Number of Residues9
Detailsbinding site for residue TRS A 505
ChainResidue
AGLY428
AGLY429
ATHR430
AARG431
AVAL435
AGLU436
APRO437
AHOH687
BHOH724

site_idAC6
Number of Residues18
Detailsbinding site for residue THG B 501
ChainResidue
BGLN57
BMET61
BLYS92
BGLN93
BILE108
BPHE110
BVAL120
BGLN165
BPHE188
BPHE189
BHIS206
BGLU215
BTRP256
BPHE312
BDHB502
BHOH617
BHOH670
BHOH751

site_idAC7
Number of Residues9
Detailsbinding site for residue DHB B 502
ChainResidue
BTYR31
BHIS60
BARG122
BTYR247
BASN250
BTRP256
BPRO258
BTHG501
BHOH619

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO B 503
ChainResidue
BGLY289
BGLY290
BASN371
BTYR372
BASN376
BASP378
BHOH629

site_idAC9
Number of Residues7
Detailsbinding site for residue EDO B 504
ChainResidue
BLEU261
BTYR265
BTYR282
BGLY286
BALA287
BASN374
BTHR375

site_idAD1
Number of Residues8
Detailsbinding site for residue TRS B 505
ChainResidue
BGLY428
BTHR430
BARG431
BLYS432
BVAL435
BGLU436
BPRO437
BHOH739

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBINDING: BINDING => ECO:0000269|PubMed:28429420
ChainResidueDetails
ATYR31
ATRP256
BTYR31
BGLN57
BHIS60
BGLN93
BVAL120
BARG122
BGLN165
BGLU215
BTYR247
AGLN57
BTRP256
AHIS60
AGLN93
AVAL120
AARG122
AGLN165
AGLU215
ATYR247

site_idSWS_FT_FI2
Number of Residues2
DetailsSITE: Important for activity => ECO:0000305|PubMed:28429420
ChainResidueDetails
AHIS60
BHIS60

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Important for activity => ECO:0000305|PubMed:28373573, ECO:0000305|PubMed:28429420
ChainResidueDetails
ATYR247
BTYR247

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PDB entries from 2024-09-04

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