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5X1L

Vanillate/3-O-methylgallate O-demethylase, LigM, tetrahydrofolate complex form

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0046274biological_processlignin catabolic process
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0046274biological_processlignin catabolic process
C0008168molecular_functionmethyltransferase activity
C0032259biological_processmethylation
C0046274biological_processlignin catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue EDO A 501
ChainResidue
AGLY289
AASN371
ATYR372
AASN376
AASP378
AHOH626

site_idAC2
Number of Residues7
Detailsbinding site for residue EDO A 502
ChainResidue
ATRP256
APRO258
AHOH653
AHOH778
ATYR31
AMET61
AARG122

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 503
ChainResidue
AGLY428
ATHR430
ALYS432
AVAL435
AHOH775
AHOH835

site_idAC4
Number of Residues16
Detailsbinding site for residue THG B 501
ChainResidue
BMET61
BLYS92
BGLN93
BILE108
BPHE110
BVAL120
BGLY121
BGLN165
BPHE188
BPHE189
BGLU215
BTRP256
BPHE312
BHOH635
BHOH647
BHOH728

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO B 502
ChainResidue
AHOH618
BTYR100
BASP268

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO B 503
ChainResidue
BGLY289
BGLY290
BASN371
BTYR372
BASN376
BASP378
BHOH643

site_idAC7
Number of Residues12
Detailsbinding site for residue THG C 501
ChainResidue
CGLN57
CMET61
CLYS92
CGLN93
CILE108
CVAL120
CGLN165
CPHE188
CPHE189
CGLU215
CTRP256
CPHE312

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO C 502
ChainResidue
CGLY289
CGLY290
CASN371
CTYR372
CASN376
CASP378
CHOH601

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsBINDING: BINDING => ECO:0000269|PubMed:28429420
ChainResidueDetails
ATYR31
ATRP256
BTYR31
BGLN57
BHIS60
BGLN93
BVAL120
BARG122
BGLN165
BGLU215
BTYR247
AGLN57
BTRP256
CTYR31
CGLN57
CHIS60
CGLN93
CVAL120
CARG122
CGLN165
CGLU215
CTYR247
AHIS60
CTRP256
AGLN93
AVAL120
AARG122
AGLN165
AGLU215
ATYR247

site_idSWS_FT_FI2
Number of Residues3
DetailsSITE: Important for activity => ECO:0000305|PubMed:28429420
ChainResidueDetails
AHIS60
BHIS60
CHIS60

site_idSWS_FT_FI3
Number of Residues3
DetailsSITE: Important for activity => ECO:0000305|PubMed:28373573, ECO:0000305|PubMed:28429420
ChainResidueDetails
ATYR247
BTYR247
CTYR247

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PDB entries from 2024-09-04

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