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5X1J

Vanillate/3-O-methylgallate O-demethylase, LigM, vanillate complex form

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0046274biological_processlignin catabolic process
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0046274biological_processlignin catabolic process
C0008168molecular_functionmethyltransferase activity
C0032259biological_processmethylation
C0046274biological_processlignin catabolic process
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue VNL A 501
ChainResidue
ATYR31
AHOH811
AHIS60
AMET61
AARG122
ATYR247
AASN250
ATRP256
APRO258
AHOH618

site_idAC2
Number of Residues6
Detailsbinding site for residue EDO A 502
ChainResidue
AGLY289
AASN371
ATYR372
AASN376
AASP378
AHOH625

site_idAC3
Number of Residues7
Detailsbinding site for residue EDO A 503
ChainResidue
ALEU261
ATYR265
ATYR282
AGLY286
AALA287
AASN374
ATHR375

site_idAC4
Number of Residues6
Detailsbinding site for residue TRS A 504
ChainResidue
AGLY428
AGLY429
ATHR430
ALYS432
AVAL435
AHOH672

site_idAC5
Number of Residues8
Detailsbinding site for residue VNL B 501
ChainResidue
BTYR31
BHIS60
BARG122
BTYR247
BASN250
BTRP256
BPRO258
BHOH626

site_idAC6
Number of Residues7
Detailsbinding site for residue EDO B 502
ChainResidue
BLEU261
BTYR265
BTYR282
BGLY286
BALA287
BASN374
BTHR375

site_idAC7
Number of Residues7
Detailsbinding site for residue EDO B 503
ChainResidue
BGLY289
BGLY290
BASN371
BTYR372
BASN376
BASP378
BHOH643

site_idAC8
Number of Residues6
Detailsbinding site for residue TRS B 504
ChainResidue
BGLY428
BTHR430
BARG431
BLYS432
BVAL435
CHOH706

site_idAC9
Number of Residues9
Detailsbinding site for residue VNL C 501
ChainResidue
CTYR31
CHIS60
CMET61
CARG122
CTYR247
CASN250
CTRP256
CPRO258
CHOH627

site_idAD1
Number of Residues7
Detailsbinding site for residue EDO C 502
ChainResidue
CGLY289
CGLY290
CASN371
CTYR372
CASN376
CASP378
CHOH611

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues30
DetailsBINDING: BINDING => ECO:0000269|PubMed:28429420
ChainResidueDetails
ATYR31
ATRP256
BTYR31
BGLN57
BHIS60
BGLN93
BVAL120
BARG122
BGLN165
BGLU215
BTYR247
AGLN57
BTRP256
CTYR31
CGLN57
CHIS60
CGLN93
CVAL120
CARG122
CGLN165
CGLU215
CTYR247
AHIS60
CTRP256
AGLN93
AVAL120
AARG122
AGLN165
AGLU215
ATYR247

site_idSWS_FT_FI2
Number of Residues3
DetailsSITE: Important for activity => ECO:0000305|PubMed:28429420
ChainResidueDetails
AHIS60
BHIS60
CHIS60

site_idSWS_FT_FI3
Number of Residues3
DetailsSITE: Important for activity => ECO:0000305|PubMed:28373573, ECO:0000305|PubMed:28429420
ChainResidueDetails
ATYR247
BTYR247
CTYR247

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PDB entries from 2024-11-06

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