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5WYR

Crystal structure and catalytic mechanism of the essential m1G37 tRNA methyltransferase TrmD from Pseudomonas aeruginosa

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0006400biological_processtRNA modification
A0008033biological_processtRNA processing
A0008168molecular_functionmethyltransferase activity
A0032259biological_processmethylation
A0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
B0005737cellular_componentcytoplasm
B0006400biological_processtRNA modification
B0008033biological_processtRNA processing
B0008168molecular_functionmethyltransferase activity
B0032259biological_processmethylation
B0052906molecular_functiontRNA (guanine(37)-N1)-methyltransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues22
Detailsbinding site for residue SFG A 400
ChainResidue
ATYR91
ATRP136
ASER137
AILE138
AGLY139
ATYR141
ALEU143
AGLY145
AGLY146
APRO149
BASP169
ALEU92
BASP174
BSER175
BASP182
ASER93
APRO94
AGLN95
AGLY118
ATYR120
AGLU121
AGLY122

site_idAC2
Number of Residues19
Detailsbinding site for residue SFG B 400
ChainResidue
AARG159
ALEU165
AASP174
ASER175
AASP182
BTYR91
BLEU92
BSER93
BGLY118
BTYR120
BGLU121
BILE138
BGLY139
BTYR141
BLEU143
BSER144
BGLY145
BGLY146
BPRO149

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00605
ChainResidueDetails
AGLY118
AILE138
BGLY118
BILE138

222624

PDB entries from 2024-07-17

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