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5WTL

Crystal structure of the periplasmic portion of outer membrane protein A (OmpA) from Capnocytophaga gingivalis

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
A0007155biological_processcell adhesion
A0016020cellular_componentmembrane
B0005509molecular_functioncalcium ion binding
B0007155biological_processcell adhesion
B0016020cellular_componentmembrane
C0005509molecular_functioncalcium ion binding
C0007155biological_processcell adhesion
C0016020cellular_componentmembrane
D0005509molecular_functioncalcium ion binding
D0007155biological_processcell adhesion
D0016020cellular_componentmembrane
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue CA A 1001
ChainResidue
AASP198
AASP200
AASP202
AILE204
AASP209
AHOH1160

site_idAC2
Number of Residues6
Detailsbinding site for residue CA A 1002
ChainResidue
ACYS211
AVAL214
AGLY222
AASP200
AASP202
AASP209

site_idAC3
Number of Residues6
Detailsbinding site for residue CA A 1003
ChainResidue
AASP225
AASP227
AASP229
AILE231
AASP236
AHOH1105

site_idAC4
Number of Residues6
Detailsbinding site for residue CA A 1004
ChainResidue
AASP227
AASP229
AASP236
ACYS238
AVAL241
AGLY249

site_idAC5
Number of Residues6
Detailsbinding site for residue CA A 1005
ChainResidue
AASP252
AASP254
AASP256
AILE258
AASP263
AHOH1113

site_idAC6
Number of Residues6
Detailsbinding site for residue CA A 1006
ChainResidue
AASP254
AASP256
AASP263
ACYS265
AVAL268
AGLY276

site_idAC7
Number of Residues6
Detailsbinding site for residue CA A 1007
ChainResidue
AASP279
AASP281
AASP283
AILE285
AASP290
AHOH1147

site_idAC8
Number of Residues6
Detailsbinding site for residue CA A 1008
ChainResidue
AASP281
AASP283
AASP290
ACYS292
AVAL295
AGLY303

site_idAC9
Number of Residues6
Detailsbinding site for residue CA A 1009
ChainResidue
AASP308
AASP310
AASP312
AVAL314
AASP319
AHOH1108

site_idAD1
Number of Residues6
Detailsbinding site for residue CA A 1010
ChainResidue
AASP310
AASP312
AASP319
ACYS321
AVAL324
AGLY332

site_idAD2
Number of Residues6
Detailsbinding site for residue CA A 1011
ChainResidue
AGLU424
AGLN426
AHOH1204
BGLU424
BGLN426
BHOH1186

site_idAD3
Number of Residues6
Detailsbinding site for residue CA B 1001
ChainResidue
BASP198
BASP200
BASP202
BILE204
BASP209
BHOH1102

site_idAD4
Number of Residues6
Detailsbinding site for residue CA B 1002
ChainResidue
BASP200
BASP202
BASP209
BCYS211
BVAL214
BGLY222

site_idAD5
Number of Residues6
Detailsbinding site for residue CA B 1003
ChainResidue
BASP225
BASP227
BASP229
BILE231
BASP236
BHOH1101

site_idAD6
Number of Residues6
Detailsbinding site for residue CA B 1004
ChainResidue
BASP227
BASP229
BASP236
BCYS238
BVAL241
BGLY249

site_idAD7
Number of Residues6
Detailsbinding site for residue CA B 1005
ChainResidue
BASP252
BASP254
BASP256
BILE258
BASP263
BHOH1115

site_idAD8
Number of Residues6
Detailsbinding site for residue CA B 1006
ChainResidue
BCYS265
BVAL268
BGLY276
BASP254
BASP256
BASP263

site_idAD9
Number of Residues6
Detailsbinding site for residue CA B 1007
ChainResidue
BASP279
BASP281
BASP283
BILE285
BASP290
BHOH1123

site_idAE1
Number of Residues6
Detailsbinding site for residue CA B 1008
ChainResidue
BASP281
BASP283
BASP290
BCYS292
BVAL295
BGLY303

site_idAE2
Number of Residues6
Detailsbinding site for residue CA B 1009
ChainResidue
BASP308
BASP310
BASP312
BVAL314
BASP319
BHOH1131

site_idAE3
Number of Residues6
Detailsbinding site for residue CA B 1010
ChainResidue
BASP310
BASP312
BASP319
BCYS321
BVAL324
BGLY332

site_idAE4
Number of Residues4
Detailsbinding site for residue SO4 B 1011
ChainResidue
BTHR355
BGLY356
BARG405
BARG447

site_idAE5
Number of Residues6
Detailsbinding site for residue CA C 1001
ChainResidue
CASP198
CASP200
CASP202
CILE204
CASP209
CHOH1104

site_idAE6
Number of Residues6
Detailsbinding site for residue CA C 1002
ChainResidue
CASP200
CASP202
CASP209
CCYS211
CVAL214
CGLY222

site_idAE7
Number of Residues6
Detailsbinding site for residue CA C 1003
ChainResidue
CASP225
CASP227
CASP229
CILE231
CASP236
CHOH1101

site_idAE8
Number of Residues6
Detailsbinding site for residue CA C 1004
ChainResidue
CASP227
CASP229
CASP236
CCYS238
CVAL241
CGLY249

site_idAE9
Number of Residues6
Detailsbinding site for residue CA C 1005
ChainResidue
CASP252
CASP254
CASP256
CILE258
CASP263
CHOH1111

site_idAF1
Number of Residues6
Detailsbinding site for residue CA C 1006
ChainResidue
CASP254
CASP256
CASP263
CCYS265
CVAL268
CGLY276

site_idAF2
Number of Residues6
Detailsbinding site for residue CA C 1007
ChainResidue
CASP279
CASP281
CASP283
CILE285
CASP290
CHOH1135

site_idAF3
Number of Residues6
Detailsbinding site for residue CA C 1008
ChainResidue
CASP281
CASP283
CASP290
CCYS292
CVAL295
CGLY303

site_idAF4
Number of Residues6
Detailsbinding site for residue CA C 1009
ChainResidue
CASP308
CASP310
CASP312
CVAL314
CASP319
CHOH1155

site_idAF5
Number of Residues6
Detailsbinding site for residue CA C 1010
ChainResidue
CASP310
CASP312
CASP319
CCYS321
CVAL324
CGLY332

site_idAF6
Number of Residues4
Detailsbinding site for residue MES C 1011
ChainResidue
CLYS438
CASN439
CLYS440
CARG443

site_idAF7
Number of Residues6
Detailsbinding site for residue SO4 C 1012
ChainResidue
CTHR355
CGLY356
CARG405
CARG447
CHOH1106
CHOH1166

site_idAF8
Number of Residues6
Detailsbinding site for residue CA C 1013
ChainResidue
CGLU424
CGLN426
CHOH1202
DGLU424
DGLN426
DHOH669

site_idAF9
Number of Residues5
Detailsbinding site for residue CA D 501
ChainResidue
DASP209
DCYS211
DVAL214
DGLY216
DGLY222

site_idAG1
Number of Residues6
Detailsbinding site for residue CA D 502
ChainResidue
DASP225
DASP227
DASP229
DILE231
DASP236
DHOH605

site_idAG2
Number of Residues6
Detailsbinding site for residue CA D 503
ChainResidue
DASP227
DASP229
DASP236
DCYS238
DVAL241
DGLY249

site_idAG3
Number of Residues6
Detailsbinding site for residue CA D 504
ChainResidue
DASP252
DASP254
DASP256
DILE258
DASP263
DHOH604

site_idAG4
Number of Residues6
Detailsbinding site for residue CA D 505
ChainResidue
DASP254
DASP256
DASP263
DCYS265
DVAL268
DGLY276

site_idAG5
Number of Residues5
Detailsbinding site for residue CA D 506
ChainResidue
DASP279
DASP281
DASP283
DILE285
DASP290

site_idAG6
Number of Residues6
Detailsbinding site for residue CA D 507
ChainResidue
DASP281
DASP283
DASP290
DCYS292
DVAL295
DGLY303

site_idAG7
Number of Residues6
Detailsbinding site for residue CA D 508
ChainResidue
DASP308
DASP310
DASP312
DVAL314
DASP319
DHOH606

site_idAG8
Number of Residues6
Detailsbinding site for residue CA D 509
ChainResidue
DASP310
DASP312
DASP319
DCYS321
DVAL324
DGLY332

Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DTDGDGVLDkdDL
ChainResidueDetails
AASP308-LEU320

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KyPNSRfR
ChainResidueDetails
ALYS377-ARG384

222926

PDB entries from 2024-07-24

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