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Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5WTL

Crystal structure of the periplasmic portion of outer membrane protein A (OmpA) from Capnocytophaga gingivalis

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005509	molecular_function	calcium ion binding
A	0007155	biological_process	cell adhesion
A	0016020	cellular_component	membrane
B	0005509	molecular_function	calcium ion binding
B	0007155	biological_process	cell adhesion
B	0016020	cellular_component	membrane
C	0005509	molecular_function	calcium ion binding
C	0007155	biological_process	cell adhesion
C	0016020	cellular_component	membrane
D	0005509	molecular_function	calcium ion binding
D	0007155	biological_process	cell adhesion
D	0016020	cellular_component	membrane

Functional Information from PDB Data

site_id	AC1
Number of Residues	6
Details	binding site for residue CA A 1001

Chain	Residue
A	ASP198
A	ASP200
A	ASP202
A	ILE204
A	ASP209
A	HOH1160

site_id	AC2
Number of Residues	6
Details	binding site for residue CA A 1002

Chain	Residue
A	CYS211
A	VAL214
A	GLY222
A	ASP200
A	ASP202
A	ASP209

site_id	AC3
Number of Residues	6
Details	binding site for residue CA A 1003

Chain	Residue
A	ASP225
A	ASP227
A	ASP229
A	ILE231
A	ASP236
A	HOH1105

site_id	AC4
Number of Residues	6
Details	binding site for residue CA A 1004

Chain	Residue
A	ASP227
A	ASP229
A	ASP236
A	CYS238
A	VAL241
A	GLY249

site_id	AC5
Number of Residues	6
Details	binding site for residue CA A 1005

Chain	Residue
A	ASP252
A	ASP254
A	ASP256
A	ILE258
A	ASP263
A	HOH1113

site_id	AC6
Number of Residues	6
Details	binding site for residue CA A 1006

Chain	Residue
A	ASP254
A	ASP256
A	ASP263
A	CYS265
A	VAL268
A	GLY276

site_id	AC7
Number of Residues	6
Details	binding site for residue CA A 1007

Chain	Residue
A	ASP279
A	ASP281
A	ASP283
A	ILE285
A	ASP290
A	HOH1147

site_id	AC8
Number of Residues	6
Details	binding site for residue CA A 1008

Chain	Residue
A	ASP281
A	ASP283
A	ASP290
A	CYS292
A	VAL295
A	GLY303

site_id	AC9
Number of Residues	6
Details	binding site for residue CA A 1009

Chain	Residue
A	ASP308
A	ASP310
A	ASP312
A	VAL314
A	ASP319
A	HOH1108

site_id	AD1
Number of Residues	6
Details	binding site for residue CA A 1010

Chain	Residue
A	ASP310
A	ASP312
A	ASP319
A	CYS321
A	VAL324
A	GLY332

site_id	AD2
Number of Residues	6
Details	binding site for residue CA A 1011

Chain	Residue
A	GLU424
A	GLN426
A	HOH1204
B	GLU424
B	GLN426
B	HOH1186

site_id	AD3
Number of Residues	6
Details	binding site for residue CA B 1001

Chain	Residue
B	ASP198
B	ASP200
B	ASP202
B	ILE204
B	ASP209
B	HOH1102

site_id	AD4
Number of Residues	6
Details	binding site for residue CA B 1002

Chain	Residue
B	ASP200
B	ASP202
B	ASP209
B	CYS211
B	VAL214
B	GLY222

site_id	AD5
Number of Residues	6
Details	binding site for residue CA B 1003

Chain	Residue
B	ASP225
B	ASP227
B	ASP229
B	ILE231
B	ASP236
B	HOH1101

site_id	AD6
Number of Residues	6
Details	binding site for residue CA B 1004

Chain	Residue
B	ASP227
B	ASP229
B	ASP236
B	CYS238
B	VAL241
B	GLY249

site_id	AD7
Number of Residues	6
Details	binding site for residue CA B 1005

Chain	Residue
B	ASP252
B	ASP254
B	ASP256
B	ILE258
B	ASP263
B	HOH1115

site_id	AD8
Number of Residues	6
Details	binding site for residue CA B 1006

Chain	Residue
B	CYS265
B	VAL268
B	GLY276
B	ASP254
B	ASP256
B	ASP263

site_id	AD9
Number of Residues	6
Details	binding site for residue CA B 1007

Chain	Residue
B	ASP279
B	ASP281
B	ASP283
B	ILE285
B	ASP290
B	HOH1123

site_id	AE1
Number of Residues	6
Details	binding site for residue CA B 1008

Chain	Residue
B	ASP281
B	ASP283
B	ASP290
B	CYS292
B	VAL295
B	GLY303

site_id	AE2
Number of Residues	6
Details	binding site for residue CA B 1009

Chain	Residue
B	ASP308
B	ASP310
B	ASP312
B	VAL314
B	ASP319
B	HOH1131

site_id	AE3
Number of Residues	6
Details	binding site for residue CA B 1010

Chain	Residue
B	ASP310
B	ASP312
B	ASP319
B	CYS321
B	VAL324
B	GLY332

site_id	AE4
Number of Residues	4
Details	binding site for residue SO4 B 1011

Chain	Residue
B	THR355
B	GLY356
B	ARG405
B	ARG447

site_id	AE5
Number of Residues	6
Details	binding site for residue CA C 1001

Chain	Residue
C	ASP198
C	ASP200
C	ASP202
C	ILE204
C	ASP209
C	HOH1104

site_id	AE6
Number of Residues	6
Details	binding site for residue CA C 1002

Chain	Residue
C	ASP200
C	ASP202
C	ASP209
C	CYS211
C	VAL214
C	GLY222

site_id	AE7
Number of Residues	6
Details	binding site for residue CA C 1003

Chain	Residue
C	ASP225
C	ASP227
C	ASP229
C	ILE231
C	ASP236
C	HOH1101

site_id	AE8
Number of Residues	6
Details	binding site for residue CA C 1004

Chain	Residue
C	ASP227
C	ASP229
C	ASP236
C	CYS238
C	VAL241
C	GLY249

site_id	AE9
Number of Residues	6
Details	binding site for residue CA C 1005

Chain	Residue
C	ASP252
C	ASP254
C	ASP256
C	ILE258
C	ASP263
C	HOH1111

site_id	AF1
Number of Residues	6
Details	binding site for residue CA C 1006

Chain	Residue
C	ASP254
C	ASP256
C	ASP263
C	CYS265
C	VAL268
C	GLY276

site_id	AF2
Number of Residues	6
Details	binding site for residue CA C 1007

Chain	Residue
C	ASP279
C	ASP281
C	ASP283
C	ILE285
C	ASP290
C	HOH1135

site_id	AF3
Number of Residues	6
Details	binding site for residue CA C 1008

Chain	Residue
C	ASP281
C	ASP283
C	ASP290
C	CYS292
C	VAL295
C	GLY303

site_id	AF4
Number of Residues	6
Details	binding site for residue CA C 1009

Chain	Residue
C	ASP308
C	ASP310
C	ASP312
C	VAL314
C	ASP319
C	HOH1155

site_id	AF5
Number of Residues	6
Details	binding site for residue CA C 1010

Chain	Residue
C	ASP310
C	ASP312
C	ASP319
C	CYS321
C	VAL324
C	GLY332

site_id	AF6
Number of Residues	4
Details	binding site for residue MES C 1011

Chain	Residue
C	LYS438
C	ASN439
C	LYS440
C	ARG443

site_id	AF7
Number of Residues	6
Details	binding site for residue SO4 C 1012

Chain	Residue
C	THR355
C	GLY356
C	ARG405
C	ARG447
C	HOH1106
C	HOH1166

site_id	AF8
Number of Residues	6
Details	binding site for residue CA C 1013

Chain	Residue
C	GLU424
C	GLN426
C	HOH1202
D	GLU424
D	GLN426
D	HOH669

site_id	AF9
Number of Residues	5
Details	binding site for residue CA D 501

Chain	Residue
D	ASP209
D	CYS211
D	VAL214
D	GLY216
D	GLY222

site_id	AG1
Number of Residues	6
Details	binding site for residue CA D 502

Chain	Residue
D	ASP225
D	ASP227
D	ASP229
D	ILE231
D	ASP236
D	HOH605

site_id	AG2
Number of Residues	6
Details	binding site for residue CA D 503

Chain	Residue
D	ASP227
D	ASP229
D	ASP236
D	CYS238
D	VAL241
D	GLY249

site_id	AG3
Number of Residues	6
Details	binding site for residue CA D 504

Chain	Residue
D	ASP252
D	ASP254
D	ASP256
D	ILE258
D	ASP263
D	HOH604

site_id	AG4
Number of Residues	6
Details	binding site for residue CA D 505

Chain	Residue
D	ASP254
D	ASP256
D	ASP263
D	CYS265
D	VAL268
D	GLY276

site_id	AG5
Number of Residues	5
Details	binding site for residue CA D 506

Chain	Residue
D	ASP279
D	ASP281
D	ASP283
D	ILE285
D	ASP290

site_id	AG6
Number of Residues	6
Details	binding site for residue CA D 507

Chain	Residue
D	ASP281
D	ASP283
D	ASP290
D	CYS292
D	VAL295
D	GLY303

site_id	AG7
Number of Residues	6
Details	binding site for residue CA D 508

Chain	Residue
D	ASP308
D	ASP310
D	ASP312
D	VAL314
D	ASP319
D	HOH606

site_id	AG8
Number of Residues	6
Details	binding site for residue CA D 509

Chain	Residue
D	ASP310
D	ASP312
D	ASP319
D	CYS321
D	VAL324
D	GLY332

Functional Information from PROSITE/UniProt

site_id	PS00018
Number of Residues	13
Details	EF_HAND_1 EF-hand calcium-binding domain. DTDGDGVLDkdDL

Chain	Residue	Details
A	ASP308-LEU320

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KyPNSRfR

Chain	Residue	Details
A	LYS377-ARG384

250059

PDB entries from 2026-03-04

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