5WQ8

CryoEM structure of type II secretion system secretin GspD in Vibrio cholerae

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0009279	cellular_component	cell outer membrane
A	0009306	biological_process	protein secretion
A	0015031	biological_process	protein transport
A	0015627	cellular_component	type II protein secretion system complex
A	0015628	biological_process	protein secretion by the type II secretion system
A	0016020	cellular_component	membrane
A	0019867	cellular_component	outer membrane
A	0042802	molecular_function	identical protein binding
B	0009279	cellular_component	cell outer membrane
B	0009306	biological_process	protein secretion
B	0015031	biological_process	protein transport
B	0015627	cellular_component	type II protein secretion system complex
B	0015628	biological_process	protein secretion by the type II secretion system
B	0016020	cellular_component	membrane
B	0019867	cellular_component	outer membrane
B	0042802	molecular_function	identical protein binding
C	0009279	cellular_component	cell outer membrane
C	0009306	biological_process	protein secretion
C	0015031	biological_process	protein transport
C	0015627	cellular_component	type II protein secretion system complex
C	0015628	biological_process	protein secretion by the type II secretion system
C	0016020	cellular_component	membrane
C	0019867	cellular_component	outer membrane
C	0042802	molecular_function	identical protein binding
D	0009279	cellular_component	cell outer membrane
D	0009306	biological_process	protein secretion
D	0015031	biological_process	protein transport
D	0015627	cellular_component	type II protein secretion system complex
D	0015628	biological_process	protein secretion by the type II secretion system
D	0016020	cellular_component	membrane
D	0019867	cellular_component	outer membrane
D	0042802	molecular_function	identical protein binding
E	0009279	cellular_component	cell outer membrane
E	0009306	biological_process	protein secretion
E	0015031	biological_process	protein transport
E	0015627	cellular_component	type II protein secretion system complex
E	0015628	biological_process	protein secretion by the type II secretion system
E	0016020	cellular_component	membrane
E	0019867	cellular_component	outer membrane
E	0042802	molecular_function	identical protein binding
F	0009279	cellular_component	cell outer membrane
F	0009306	biological_process	protein secretion
F	0015031	biological_process	protein transport
F	0015627	cellular_component	type II protein secretion system complex
F	0015628	biological_process	protein secretion by the type II secretion system
F	0016020	cellular_component	membrane
F	0019867	cellular_component	outer membrane
F	0042802	molecular_function	identical protein binding
G	0009279	cellular_component	cell outer membrane
G	0009306	biological_process	protein secretion
G	0015031	biological_process	protein transport
G	0015627	cellular_component	type II protein secretion system complex
G	0015628	biological_process	protein secretion by the type II secretion system
G	0016020	cellular_component	membrane
G	0019867	cellular_component	outer membrane
G	0042802	molecular_function	identical protein binding
H	0009279	cellular_component	cell outer membrane
H	0009306	biological_process	protein secretion
H	0015031	biological_process	protein transport
H	0015627	cellular_component	type II protein secretion system complex
H	0015628	biological_process	protein secretion by the type II secretion system
H	0016020	cellular_component	membrane
H	0019867	cellular_component	outer membrane
H	0042802	molecular_function	identical protein binding
I	0009279	cellular_component	cell outer membrane
I	0009306	biological_process	protein secretion
I	0015031	biological_process	protein transport
I	0015627	cellular_component	type II protein secretion system complex
I	0015628	biological_process	protein secretion by the type II secretion system
I	0016020	cellular_component	membrane
I	0019867	cellular_component	outer membrane
I	0042802	molecular_function	identical protein binding
J	0009279	cellular_component	cell outer membrane
J	0009306	biological_process	protein secretion
J	0015031	biological_process	protein transport
J	0015627	cellular_component	type II protein secretion system complex
J	0015628	biological_process	protein secretion by the type II secretion system
J	0016020	cellular_component	membrane
J	0019867	cellular_component	outer membrane
J	0042802	molecular_function	identical protein binding
K	0009279	cellular_component	cell outer membrane
K	0009306	biological_process	protein secretion
K	0015031	biological_process	protein transport
K	0015627	cellular_component	type II protein secretion system complex
K	0015628	biological_process	protein secretion by the type II secretion system
K	0016020	cellular_component	membrane
K	0019867	cellular_component	outer membrane
K	0042802	molecular_function	identical protein binding
L	0009279	cellular_component	cell outer membrane
L	0009306	biological_process	protein secretion
L	0015031	biological_process	protein transport
L	0015627	cellular_component	type II protein secretion system complex
L	0015628	biological_process	protein secretion by the type II secretion system
L	0016020	cellular_component	membrane
L	0019867	cellular_component	outer membrane
L	0042802	molecular_function	identical protein binding
M	0009279	cellular_component	cell outer membrane
M	0009306	biological_process	protein secretion
M	0015031	biological_process	protein transport
M	0015627	cellular_component	type II protein secretion system complex
M	0015628	biological_process	protein secretion by the type II secretion system
M	0016020	cellular_component	membrane
M	0019867	cellular_component	outer membrane
M	0042802	molecular_function	identical protein binding
N	0009279	cellular_component	cell outer membrane
N	0009306	biological_process	protein secretion
N	0015031	biological_process	protein transport
N	0015627	cellular_component	type II protein secretion system complex
N	0015628	biological_process	protein secretion by the type II secretion system
N	0016020	cellular_component	membrane
N	0019867	cellular_component	outer membrane
N	0042802	molecular_function	identical protein binding
O	0009279	cellular_component	cell outer membrane
O	0009306	biological_process	protein secretion
O	0015031	biological_process	protein transport
O	0015627	cellular_component	type II protein secretion system complex
O	0015628	biological_process	protein secretion by the type II secretion system
O	0016020	cellular_component	membrane
O	0019867	cellular_component	outer membrane
O	0042802	molecular_function	identical protein binding

Functional Information from PROSITE/UniProt

site_id	PS00875
Number of Residues	34
Details	T2SP_D Bacterial type II secretion system protein D signature. GQMLVLGGLideraleseskVPLLGdIPLLgq.LF

Chain	Residue	Details
A	GLY532-PHE565

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	15
Details	SITE: May serve as a pivot that allows opening of the central gate for substrate egress => ECO:0000305|PubMed:28067918

Chain	Residue	Details
A	GLY453
J	GLY453
K	GLY453
L	GLY453
M	GLY453
N	GLY453
O	GLY453
B	GLY453
C	GLY453
D	GLY453
E	GLY453
F	GLY453
G	GLY453
H	GLY453
I	GLY453

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