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5WOL

Crystal structure of dihydrodipicolinate reductase DapB from Coxiella burnetii

Functional Information from GO Data
ChainGOidnamespacecontents
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0008652biological_processamino acid biosynthetic process
A0008839molecular_function4-hydroxy-tetrahydrodipicolinate reductase
A0009085biological_processlysine biosynthetic process
A0009089biological_processlysine biosynthetic process via diaminopimelate
A0016491molecular_functionoxidoreductase activity
A0016726molecular_functionoxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor
A0019877biological_processdiaminopimelate biosynthetic process
A0050661molecular_functionNADP binding
A0051287molecular_functionNAD binding
Functional Information from PDB Data
site_idAC1
Number of Residues27
Detailsbinding site for residue NAP A 301
ChainResidue
AASN8
ATHR57
ASER60
AGLY78
ATHR79
ATHR80
AALA104
APRO105
AASN106
APHE107
AHOH418
AASN11
AHOH449
AHOH450
AHOH459
AHOH466
AHOH469
AHOH471
AHOH508
AHOH538
AGLY12
ALYS13
AMET14
AGLY35
AARG36
APHE55
ATHR56

site_idAC2
Number of Residues7
Detailsbinding site for residue SO4 A 302
ChainResidue
ALYS138
AGLY144
ATHR145
AHOH401
AHOH421
AHOH436
AHOH520

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 303
ChainResidue
AGLN137
ALYS138
AILE139
AASP140
AHOH414

site_idAC4
Number of Residues4
Detailsbinding site for residue 6PC A 304
ChainResidue
AHIS135
APHE188
AARG211
AHOH436

site_idAC5
Number of Residues6
Detailsbinding site for residue 6PC A 305
ChainResidue
APRO105
ATHR145
ALYS148
AHOH461
AHOH462
AHOH478

site_idAC6
Number of Residues7
Detailsbinding site for residue PE3 A 306
ChainResidue
AMET133
AHIS190
AILE194
ATHR201
ATHR203
AARG205
AHOH481

Functional Information from PROSITE/UniProt
site_idPS01298
Number of Residues18
DetailsDAPB Dihydrodipicolinate reductase signature. EIiEmHhsqKiDapSGTA
ChainResidueDetails
AGLU129-ALA146

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00102","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"HAMAP-Rule","id":"MF_00102","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00102","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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