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5WLG

Crystal Structure of H-2Db with the GAP501 peptide (SQL)

Functional Information from GO Data
ChainGOidnamespacecontents
B0001913biological_processT cell mediated cytotoxicity
B0001916biological_processpositive regulation of T cell mediated cytotoxicity
B0002237biological_processresponse to molecule of bacterial origin
B0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
B0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
B0002502biological_processpeptide antigen assembly with MHC class I protein complex
B0002726biological_processpositive regulation of T cell cytokine production
B0005198molecular_functionstructural molecule activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006826biological_processiron ion transport
B0006879biological_processintracellular iron ion homeostasis
B0006955biological_processimmune response
B0006968biological_processcellular defense response
B0007608biological_processsensory perception of smell
B0007611biological_processlearning or memory
B0009897cellular_componentexternal side of plasma membrane
B0010977biological_processnegative regulation of neuron projection development
B0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
B0030670cellular_componentphagocytic vesicle membrane
B0033077biological_processT cell differentiation in thymus
B0034756biological_processregulation of iron ion transport
B0042026biological_processprotein refolding
B0042612cellular_componentMHC class I protein complex
B0042802molecular_functionidentical protein binding
B0042803molecular_functionprotein homodimerization activity
B0042824cellular_componentMHC class I peptide loading complex
B0045646biological_processregulation of erythrocyte differentiation
B0048260biological_processpositive regulation of receptor-mediated endocytosis
B0050680biological_processnegative regulation of epithelial cell proliferation
B0050768biological_processnegative regulation of neurogenesis
B0051289biological_processprotein homotetramerization
B0060586biological_processmulticellular organismal-level iron ion homeostasis
B0071281biological_processcellular response to iron ion
B0071283biological_processcellular response to iron(III) ion
B0071316biological_processcellular response to nicotine
B1990000biological_processamyloid fibril formation
B1990712cellular_componentHFE-transferrin receptor complex
B2000774biological_processpositive regulation of cellular senescence
B2000978biological_processnegative regulation of forebrain neuron differentiation
G0001913biological_processT cell mediated cytotoxicity
G0001916biological_processpositive regulation of T cell mediated cytotoxicity
G0002237biological_processresponse to molecule of bacterial origin
G0002474biological_processantigen processing and presentation of peptide antigen via MHC class I
G0002481biological_processantigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
G0002502biological_processpeptide antigen assembly with MHC class I protein complex
G0002726biological_processpositive regulation of T cell cytokine production
G0005198molecular_functionstructural molecule activity
G0005515molecular_functionprotein binding
G0005576cellular_componentextracellular region
G0005615cellular_componentextracellular space
G0005794cellular_componentGolgi apparatus
G0005829cellular_componentcytosol
G0005886cellular_componentplasma membrane
G0006826biological_processiron ion transport
G0006879biological_processintracellular iron ion homeostasis
G0006955biological_processimmune response
G0006968biological_processcellular defense response
G0007608biological_processsensory perception of smell
G0007611biological_processlearning or memory
G0009897cellular_componentexternal side of plasma membrane
G0010977biological_processnegative regulation of neuron projection development
G0019885biological_processantigen processing and presentation of endogenous peptide antigen via MHC class I
G0030670cellular_componentphagocytic vesicle membrane
G0033077biological_processT cell differentiation in thymus
G0034756biological_processregulation of iron ion transport
G0042026biological_processprotein refolding
G0042612cellular_componentMHC class I protein complex
G0042802molecular_functionidentical protein binding
G0042803molecular_functionprotein homodimerization activity
G0042824cellular_componentMHC class I peptide loading complex
G0045646biological_processregulation of erythrocyte differentiation
G0048260biological_processpositive regulation of receptor-mediated endocytosis
G0050680biological_processnegative regulation of epithelial cell proliferation
G0050768biological_processnegative regulation of neurogenesis
G0051289biological_processprotein homotetramerization
G0060586biological_processmulticellular organismal-level iron ion homeostasis
G0071281biological_processcellular response to iron ion
G0071283biological_processcellular response to iron(III) ion
G0071316biological_processcellular response to nicotine
G1990000biological_processamyloid fibril formation
G1990712cellular_componentHFE-transferrin receptor complex
G2000774biological_processpositive regulation of cellular senescence
G2000978biological_processnegative regulation of forebrain neuron differentiation
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue NA A 301
ChainResidue
AARG6
ATYR27
AASN30
ACL302

site_idAC2
Number of Residues1
Detailsbinding site for residue CL A 302
ChainResidue
ANA301

site_idAC3
Number of Residues2
Detailsbinding site for residue NA G 101
ChainResidue
GSER52
GASP53

site_idAC4
Number of Residues2
Detailsbinding site for residue NA I 201
ChainResidue
IPHE134
IALA173

Functional Information from PROSITE/UniProt
site_idPS00290
Number of Residues7
DetailsIG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YTCRVYH
ChainResidueDetails
ATYR257-HIS263
BTYR78-HIS84

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:3980466, ECO:0000269|PubMed:7118212
ChainResidueDetails
AASN86
FASN86

site_idSWS_FT_FI2
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000305
ChainResidueDetails
AASN176
FASN176

site_idSWS_FT_FI3
Number of Residues2
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:3980466
ChainResidueDetails
AASN256
FASN256

224201

PDB entries from 2024-08-28

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