Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5W6Z

Crystal structure of the H24W mutant of HsNUDT16

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0000287	molecular_function	magnesium ion binding
A	0003723	molecular_function	RNA binding
A	0003729	molecular_function	mRNA binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005730	cellular_component	nucleolus
A	0005737	cellular_component	cytoplasm
A	0006402	biological_process	mRNA catabolic process
A	0008235	molecular_function	metalloexopeptidase activity
A	0009117	biological_process	nucleotide metabolic process
A	0016077	biological_process	sno(s)RNA catabolic process
A	0016787	molecular_function	hydrolase activity
A	0030145	molecular_function	manganese ion binding
A	0030515	molecular_function	snoRNA binding
A	0031404	molecular_function	chloride ion binding
A	0035863	biological_process	dITP catabolic process
A	0035870	molecular_function	dITP diphosphatase activity
A	0042802	molecular_function	identical protein binding
A	0042803	molecular_function	protein homodimerization activity
A	0046872	molecular_function	metal ion binding
A	0050897	molecular_function	cobalt ion binding
A	0090068	biological_process	positive regulation of cell cycle process
A	0097383	molecular_function	dIDP phosphatase activity
A	0110153	molecular_function	RNA NAD-cap (NMN-forming) hydrolase activity
A	0110155	biological_process	NAD-cap decapping
A	0140933	molecular_function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
A	1990003	molecular_function	IDP phosphatase activity
A	1990174	molecular_function	phosphodiesterase decapping endonuclease activity
A	2000233	biological_process	negative regulation of rRNA processing
B	0000166	molecular_function	nucleotide binding
B	0000287	molecular_function	magnesium ion binding
B	0003723	molecular_function	RNA binding
B	0003729	molecular_function	mRNA binding
B	0005634	cellular_component	nucleus
B	0005654	cellular_component	nucleoplasm
B	0005730	cellular_component	nucleolus
B	0005737	cellular_component	cytoplasm
B	0006402	biological_process	mRNA catabolic process
B	0008235	molecular_function	metalloexopeptidase activity
B	0009117	biological_process	nucleotide metabolic process
B	0016077	biological_process	sno(s)RNA catabolic process
B	0016787	molecular_function	hydrolase activity
B	0030145	molecular_function	manganese ion binding
B	0030515	molecular_function	snoRNA binding
B	0031404	molecular_function	chloride ion binding
B	0035863	biological_process	dITP catabolic process
B	0035870	molecular_function	dITP diphosphatase activity
B	0042802	molecular_function	identical protein binding
B	0042803	molecular_function	protein homodimerization activity
B	0046872	molecular_function	metal ion binding
B	0050897	molecular_function	cobalt ion binding
B	0090068	biological_process	positive regulation of cell cycle process
B	0097383	molecular_function	dIDP phosphatase activity
B	0110153	molecular_function	RNA NAD-cap (NMN-forming) hydrolase activity
B	0110155	biological_process	NAD-cap decapping
B	0140933	molecular_function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
B	1990003	molecular_function	IDP phosphatase activity
B	1990174	molecular_function	phosphodiesterase decapping endonuclease activity
B	2000233	biological_process	negative regulation of rRNA processing
D	0000166	molecular_function	nucleotide binding
D	0000287	molecular_function	magnesium ion binding
D	0003723	molecular_function	RNA binding
D	0003729	molecular_function	mRNA binding
D	0005634	cellular_component	nucleus
D	0005654	cellular_component	nucleoplasm
D	0005730	cellular_component	nucleolus
D	0005737	cellular_component	cytoplasm
D	0006402	biological_process	mRNA catabolic process
D	0008235	molecular_function	metalloexopeptidase activity
D	0009117	biological_process	nucleotide metabolic process
D	0016077	biological_process	sno(s)RNA catabolic process
D	0016787	molecular_function	hydrolase activity
D	0030145	molecular_function	manganese ion binding
D	0030515	molecular_function	snoRNA binding
D	0031404	molecular_function	chloride ion binding
D	0035863	biological_process	dITP catabolic process
D	0035870	molecular_function	dITP diphosphatase activity
D	0042802	molecular_function	identical protein binding
D	0042803	molecular_function	protein homodimerization activity
D	0046872	molecular_function	metal ion binding
D	0050897	molecular_function	cobalt ion binding
D	0090068	biological_process	positive regulation of cell cycle process
D	0097383	molecular_function	dIDP phosphatase activity
D	0110153	molecular_function	RNA NAD-cap (NMN-forming) hydrolase activity
D	0110155	biological_process	NAD-cap decapping
D	0140933	molecular_function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
D	1990003	molecular_function	IDP phosphatase activity
D	1990174	molecular_function	phosphodiesterase decapping endonuclease activity
D	2000233	biological_process	negative regulation of rRNA processing
E	0000166	molecular_function	nucleotide binding
E	0000287	molecular_function	magnesium ion binding
E	0003723	molecular_function	RNA binding
E	0003729	molecular_function	mRNA binding
E	0005634	cellular_component	nucleus
E	0005654	cellular_component	nucleoplasm
E	0005730	cellular_component	nucleolus
E	0005737	cellular_component	cytoplasm
E	0006402	biological_process	mRNA catabolic process
E	0008235	molecular_function	metalloexopeptidase activity
E	0009117	biological_process	nucleotide metabolic process
E	0016077	biological_process	sno(s)RNA catabolic process
E	0016787	molecular_function	hydrolase activity
E	0030145	molecular_function	manganese ion binding
E	0030515	molecular_function	snoRNA binding
E	0031404	molecular_function	chloride ion binding
E	0035863	biological_process	dITP catabolic process
E	0035870	molecular_function	dITP diphosphatase activity
E	0042802	molecular_function	identical protein binding
E	0042803	molecular_function	protein homodimerization activity
E	0046872	molecular_function	metal ion binding
E	0050897	molecular_function	cobalt ion binding
E	0090068	biological_process	positive regulation of cell cycle process
E	0097383	molecular_function	dIDP phosphatase activity
E	0110153	molecular_function	RNA NAD-cap (NMN-forming) hydrolase activity
E	0110155	biological_process	NAD-cap decapping
E	0140933	molecular_function	5'-(N(7)-methylguanosine 5'-triphospho)-[mRNA] hydrolase activity
E	1990003	molecular_function	IDP phosphatase activity
E	1990174	molecular_function	phosphodiesterase decapping endonuclease activity
E	2000233	biological_process	negative regulation of rRNA processing

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue NA A 201

Chain	Residue
A	GLN48
A	ARG50
A	GLU136
A	VAL137

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	16
Details	BINDING: BINDING => ECO:0000305\|PubMed:26121039

Chain	Residue	Details
A	TRP24
D	ARG50
D	PHE57
D	GLN170
E	TRP24
E	ARG50
E	PHE57
E	GLN170
A	ARG50
A	PHE57
A	GLN170
B	TRP24
B	ARG50
B	PHE57
B	GLN170
D	TRP24

site_id	SWS_FT_FI2
Number of Residues	4
Details	BINDING: BINDING => ECO:0000269\|PubMed:32432673, ECO:0000305\|PubMed:26121039, ECO:0007744\|PDB:6X7U

Chain	Residue	Details
A	GLY59
B	GLY59
D	GLY59
E	GLY59

site_id	SWS_FT_FI3
Number of Residues	8
Details	BINDING: BINDING => ECO:0000250\|UniProtKB:Q6TEC1

Chain	Residue	Details
A	GLU76
A	GLU80
B	GLU76
B	GLU80
D	GLU76
D	GLU80
E	GLU76
E	GLU80

site_id	SWS_FT_FI4
Number of Residues	8
Details	BINDING: BINDING => ECO:0000269\|PubMed:32432673, ECO:0007744\|PDB:6X7U, ECO:0007744\|PDB:6X7V

Chain	Residue	Details
A	HIS99
A	GLU173
B	HIS99
B	GLU173
D	HIS99
D	GLU173
E	HIS99
E	GLU173

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)