5W2M
APOBEC3F Catalytic Domain Complex with a Single-Stranded DNA
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0016787 | molecular_function | hydrolase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0016787 | molecular_function | hydrolase activity |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0008270 | molecular_function | zinc ion binding |
| C | 0016787 | molecular_function | hydrolase activity |
| D | 0003824 | molecular_function | catalytic activity |
| D | 0008270 | molecular_function | zinc ion binding |
| D | 0016787 | molecular_function | hydrolase activity |
| J | 0003824 | molecular_function | catalytic activity |
| J | 0008270 | molecular_function | zinc ion binding |
| J | 0016787 | molecular_function | hydrolase activity |
| K | 0003824 | molecular_function | catalytic activity |
| K | 0008270 | molecular_function | zinc ion binding |
| K | 0016787 | molecular_function | hydrolase activity |
| L | 0003824 | molecular_function | catalytic activity |
| L | 0008270 | molecular_function | zinc ion binding |
| L | 0016787 | molecular_function | hydrolase activity |
| M | 0003824 | molecular_function | catalytic activity |
| M | 0008270 | molecular_function | zinc ion binding |
| M | 0016787 | molecular_function | hydrolase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue ZN A 801 |
| Chain | Residue |
| A | HIS247 |
| A | HIS249 |
| C | HIS228 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue ZN B 801 |
| Chain | Residue |
| B | HIS247 |
| B | HIS249 |
| D | HIS228 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue ZN J 801 |
| Chain | Residue |
| J | HIS247 |
| J | HIS249 |
| L | HIS228 |
| site_id | AC4 |
| Number of Residues | 3 |
| Details | binding site for residue ZN K 801 |
| Chain | Residue |
| K | HIS247 |
| K | HIS249 |
| M | HIS228 |
Functional Information from PROSITE/UniProt
| site_id | PS00903 |
| Number of Residues | 39 |
| Details | CYT_DCMP_DEAMINASES_1 Cytidine and deoxycytidylate deaminases zinc-binding region signature. HAErcFLswfcddilspntnyevtwytsws..........PCpe......CageV |
| Chain | Residue | Details |
| A | HIS249-VAL287 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"PROSITE-ProRule","id":"PRU01083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"31792451","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6NIL","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 24 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01083","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"27139641","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31792451","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6NIL","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 48 |
| Details | Cross-link: {"description":"(Microbial infection) Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"23318957","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
