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5VZD

Pre-catalytic ternary complex of human Polymerase Mu (W434A) mutant with incoming nonhydrolyzable UMPNPP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0003887molecular_functionDNA-directed DNA polymerase activity
A0005634cellular_componentnucleus
A0006281biological_processDNA repair
A0016779molecular_functionnucleotidyltransferase activity
A0034061molecular_functionDNA polymerase activity
Functional Information from PDB Data
site_idAC1
Number of Residues28
Detailsbinding site for residue 2KH A 701
ChainResidue
AGLY319
AALA434
ATHR435
AGLY436
ALYS438
AMG702
AMG703
AHOH806
AHOH809
AHOH848
AHOH854
AGLY320
AHOH855
AHOH877
AHOH886
AHOH899
AHOH909
AHOH931
AHOH975
PDA4
TDA5
AARG323
ALYS325
AGLY328
AHIS329
AASP330
AASP332
AGLY433

site_idAC2
Number of Residues8
Detailsbinding site for residue MG A 702
ChainResidue
AASP330
AASP332
AASP418
A2KH701
AMG703
AHOH848
AHOH855
PDA4

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 703
ChainResidue
AASP330
AASP332
A2KH701
AMG702
AHOH899

site_idAC4
Number of Residues6
Detailsbinding site for residue NA A 704
ChainResidue
ATHR241
AILE243
AVAL246
PDT3
PHOH111
PHOH112

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 705
ChainResidue
AARG387
AALA434
AHOH809
AHOH827
PDA4

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 706
ChainResidue
APRO190
ASER191
AGLN198
AHOH833
AHOH930

site_idAC7
Number of Residues5
Detailsbinding site for residue EPE A 707
ChainResidue
ALYS325
ALEU326
AGLN327
AHOH828
AHOH838

Functional Information from PROSITE/UniProt
site_idPS00522
Number of Residues20
DetailsDNA_POLYMERASE_X DNA polymerase family X signature. GGFrRGklqGhDVDFLIthP
ChainResidueDetails
AGLY319-PRO338

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AASP330
AASP332
AASP418

site_idSWS_FT_FI2
Number of Residues1
DetailsSITE: Responsible for the low discrimination between dNTP and rNTP
ChainResidueDetails
AGLY433

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PDB entries from 2024-07-10

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