Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

5VHF

Conformational Landscape of the p28-Bound Human Proteasome Regulatory Particle

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005524	molecular_function	ATP binding
A	0016887	molecular_function	ATP hydrolysis activity
B	0005524	molecular_function	ATP binding
B	0016887	molecular_function	ATP hydrolysis activity
C	0000502	cellular_component	proteasome complex
C	0005102	molecular_function	signaling receptor binding
C	0005515	molecular_function	protein binding
C	0005524	molecular_function	ATP binding
C	0005634	cellular_component	nucleus
C	0005654	cellular_component	nucleoplasm
C	0005737	cellular_component	cytoplasm
C	0005829	cellular_component	cytosol
C	0005838	cellular_component	proteasome regulatory particle
C	0006357	biological_process	regulation of transcription by RNA polymerase II
C	0008134	molecular_function	transcription factor binding
C	0008540	cellular_component	proteasome regulatory particle, base subcomplex
C	0016020	cellular_component	membrane
C	0016887	molecular_function	ATP hydrolysis activity
C	0022624	cellular_component	proteasome accessory complex
C	0031410	cellular_component	cytoplasmic vesicle
C	0031531	molecular_function	thyrotropin-releasing hormone receptor binding
C	0036402	molecular_function	proteasome-activating activity
C	0043069	biological_process	negative regulation of programmed cell death
C	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
C	0045892	biological_process	negative regulation of DNA-templated transcription
C	0045893	biological_process	positive regulation of DNA-templated transcription
C	0070062	cellular_component	extracellular exosome
C	0072562	cellular_component	blood microparticle
C	0140296	molecular_function	general transcription initiation factor binding
C	0140297	molecular_function	DNA-binding transcription factor binding
C	1901800	biological_process	positive regulation of proteasomal protein catabolic process
D	0005524	molecular_function	ATP binding
D	0016887	molecular_function	ATP hydrolysis activity
E	0000502	cellular_component	proteasome complex
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005634	cellular_component	nucleus
E	0005654	cellular_component	nucleoplasm
E	0005737	cellular_component	cytoplasm
E	0005829	cellular_component	cytosol
E	0008540	cellular_component	proteasome regulatory particle, base subcomplex
E	0016020	cellular_component	membrane
E	0016234	cellular_component	inclusion body
E	0016887	molecular_function	ATP hydrolysis activity
E	0022624	cellular_component	proteasome accessory complex
E	0030674	molecular_function	protein-macromolecule adaptor activity
E	0031597	cellular_component	cytosolic proteasome complex
E	0036402	molecular_function	proteasome-activating activity
E	0036503	biological_process	ERAD pathway
E	0042802	molecular_function	identical protein binding
E	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
E	0045899	biological_process	positive regulation of RNA polymerase II transcription preinitiation complex assembly
E	0070062	cellular_component	extracellular exosome
E	0090261	biological_process	positive regulation of inclusion body assembly
E	1901800	biological_process	positive regulation of proteasomal protein catabolic process
F	0005524	molecular_function	ATP binding
F	0016887	molecular_function	ATP hydrolysis activity
G	0000122	biological_process	negative regulation of transcription by RNA polymerase II
G	0000502	cellular_component	proteasome complex
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005654	cellular_component	nucleoplasm
G	0005737	cellular_component	cytoplasm
G	0005829	cellular_component	cytosol
G	0005856	cellular_component	cytoskeleton
G	0005886	cellular_component	plasma membrane
G	0006357	biological_process	regulation of transcription by RNA polymerase II
G	0006915	biological_process	apoptotic process
G	0007253	biological_process	cytoplasmic sequestering of NF-kappaB
G	0008092	molecular_function	cytoskeletal protein binding
G	0008134	molecular_function	transcription factor binding
G	0008540	cellular_component	proteasome regulatory particle, base subcomplex
G	0030307	biological_process	positive regulation of cell growth
G	0030674	molecular_function	protein-macromolecule adaptor activity
G	0031398	biological_process	positive regulation of protein ubiquitination
G	0032088	biological_process	negative regulation of NF-kappaB transcription factor activity
G	0032436	biological_process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process
G	0043005	cellular_component	neuron projection
G	0043066	biological_process	negative regulation of apoptotic process
G	0043409	biological_process	negative regulation of MAPK cascade
G	0043518	biological_process	negative regulation of DNA damage response, signal transduction by p53 class mediator
G	0044325	molecular_function	transmembrane transporter binding
G	0045111	cellular_component	intermediate filament cytoskeleton
G	0045737	biological_process	positive regulation of cyclin-dependent protein serine/threonine kinase activity
G	0061629	molecular_function	RNA polymerase II-specific DNA-binding transcription factor binding
G	0070682	biological_process	proteasome regulatory particle assembly
G	0072659	biological_process	protein localization to plasma membrane
G	0090201	biological_process	negative regulation of release of cytochrome c from mitochondria
U	0000502	cellular_component	proteasome complex
U	0030234	molecular_function	enzyme regulator activity
U	0042176	biological_process	regulation of protein catabolic process
V	0000502	cellular_component	proteasome complex
V	0030234	molecular_function	enzyme regulator activity
V	0042176	biological_process	regulation of protein catabolic process
W	0000502	cellular_component	proteasome complex
W	0005515	molecular_function	protein binding
W	0005576	cellular_component	extracellular region
W	0005654	cellular_component	nucleoplasm
W	0005737	cellular_component	cytoplasm
W	0005829	cellular_component	cytosol
W	0005838	cellular_component	proteasome regulatory particle
W	0008541	cellular_component	proteasome regulatory particle, lid subcomplex
W	0016020	cellular_component	membrane
W	0022624	cellular_component	proteasome accessory complex
W	0034774	cellular_component	secretory granule lumen
W	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
W	0070062	cellular_component	extracellular exosome
W	1904813	cellular_component	ficolin-1-rich granule lumen
X	0000502	cellular_component	proteasome complex
X	0005198	molecular_function	structural molecule activity
X	0005515	molecular_function	protein binding
X	0005576	cellular_component	extracellular region
X	0005634	cellular_component	nucleus
X	0005654	cellular_component	nucleoplasm
X	0005737	cellular_component	cytoplasm
X	0005829	cellular_component	cytosol
X	0005838	cellular_component	proteasome regulatory particle
X	0006511	biological_process	ubiquitin-dependent protein catabolic process
X	0008541	cellular_component	proteasome regulatory particle, lid subcomplex
X	0016020	cellular_component	membrane
X	0022624	cellular_component	proteasome accessory complex
X	0032991	cellular_component	protein-containing complex
X	0034774	cellular_component	secretory granule lumen
X	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
X	0043248	biological_process	proteasome assembly
X	0048863	biological_process	stem cell differentiation
X	1904813	cellular_component	ficolin-1-rich granule lumen
Y	0000502	cellular_component	proteasome complex
Y	0005515	molecular_function	protein binding
Y	0005576	cellular_component	extracellular region
Y	0005654	cellular_component	nucleoplasm
Y	0005829	cellular_component	cytosol
Y	0005838	cellular_component	proteasome regulatory particle
Y	0022624	cellular_component	proteasome accessory complex
Y	0034774	cellular_component	secretory granule lumen
Y	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
Y	1904813	cellular_component	ficolin-1-rich granule lumen
Z	0005838	cellular_component	proteasome regulatory particle
Z	0008233	molecular_function	peptidase activity
Z	0008237	molecular_function	metallopeptidase activity
a	0000502	cellular_component	proteasome complex
a	0005198	molecular_function	structural molecule activity
a	0005515	molecular_function	protein binding
a	0005576	cellular_component	extracellular region
a	0005634	cellular_component	nucleus
a	0005654	cellular_component	nucleoplasm
a	0005829	cellular_component	cytosol
a	0005838	cellular_component	proteasome regulatory particle
a	0006511	biological_process	ubiquitin-dependent protein catabolic process
a	0007127	biological_process	meiosis I
a	0008541	cellular_component	proteasome regulatory particle, lid subcomplex
a	0016020	cellular_component	membrane
a	0022624	cellular_component	proteasome accessory complex
a	0034774	cellular_component	secretory granule lumen
a	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
a	1904813	cellular_component	ficolin-1-rich granule lumen
c	0000502	cellular_component	proteasome complex
c	0000724	biological_process	double-strand break repair via homologous recombination
c	0005515	molecular_function	protein binding
c	0005576	cellular_component	extracellular region
c	0005634	cellular_component	nucleus
c	0005654	cellular_component	nucleoplasm
c	0005829	cellular_component	cytosol
c	0006281	biological_process	DNA repair
c	0006303	biological_process	double-strand break repair via nonhomologous end joining
c	0006508	biological_process	proteolysis
c	0006511	biological_process	ubiquitin-dependent protein catabolic process
c	0008233	molecular_function	peptidase activity
c	0008237	molecular_function	metallopeptidase activity
c	0008541	cellular_component	proteasome regulatory particle, lid subcomplex
c	0016579	biological_process	protein deubiquitination
c	0022624	cellular_component	proteasome accessory complex
c	0031597	cellular_component	cytosolic proteasome complex
c	0034774	cellular_component	secretory granule lumen
c	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
c	0045471	biological_process	response to ethanol
c	0046872	molecular_function	metal ion binding
c	0061133	molecular_function	endopeptidase activator activity
c	0061136	biological_process	regulation of proteasomal protein catabolic process
c	0061578	molecular_function	K63-linked deubiquitinase activity
c	0070536	biological_process	protein K63-linked deubiquitination
c	0070628	molecular_function	proteasome binding
c	0140492	molecular_function	metal-dependent deubiquitinase activity
c	1904813	cellular_component	ficolin-1-rich granule lumen
d	0005838	cellular_component	proteasome regulatory particle
d	0006508	biological_process	proteolysis
e	0000502	cellular_component	proteasome complex
e	0000724	biological_process	double-strand break repair via homologous recombination
e	0005515	molecular_function	protein binding
e	0005634	cellular_component	nucleus
e	0005654	cellular_component	nucleoplasm
e	0005829	cellular_component	cytosol
e	0006406	biological_process	mRNA export from nucleus
e	0008541	cellular_component	proteasome regulatory particle, lid subcomplex
e	0032039	cellular_component	integrator complex
e	0032991	cellular_component	protein-containing complex
e	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
e	0043248	biological_process	proteasome assembly
f	0000502	cellular_component	proteasome complex
f	0005515	molecular_function	protein binding
f	0005576	cellular_component	extracellular region
f	0005634	cellular_component	nucleus
f	0005654	cellular_component	nucleoplasm
f	0005829	cellular_component	cytosol
f	0005838	cellular_component	proteasome regulatory particle
f	0008540	cellular_component	proteasome regulatory particle, base subcomplex
f	0016020	cellular_component	membrane
f	0022624	cellular_component	proteasome accessory complex
f	0030234	molecular_function	enzyme regulator activity
f	0034515	cellular_component	proteasome storage granule
f	0034774	cellular_component	secretory granule lumen
f	0042176	biological_process	regulation of protein catabolic process
f	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
f	0070062	cellular_component	extracellular exosome
f	1904813	cellular_component	ficolin-1-rich granule lumen

Functional Information from PDB Data

site_id	AC1
Number of Residues	1
Details	binding site for residue ZN c 400

Chain	Residue
c	PHE118

Functional Information from PROSITE/UniProt

site_id	PS00674
Number of Residues	19
Details	AAA AAA-protein family signature. IkVImATNridiLDsALl.R

Chain	Residue	Details
C	ILE289-ARG307
E	VAL273-ARG291
B	VAL325-ARG343
F	VAL326-ARG344
A	ILE315-ARG333
D	VAL305-ARG323

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:17081983, ECO:0007744\|PubMed:17323924, ECO:0007744\|PubMed:17924679, ECO:0007744\|PubMed:18669648, ECO:0007744\|PubMed:18691976, ECO:0007744\|PubMed:19690332, ECO:0007744\|PubMed:20068231, ECO:0007744\|PubMed:21406692, ECO:0007744\|PubMed:23186163, ECO:0007744\|PubMed:24275569

Chain	Residue	Details
f	SER16
c	HIS115
c	ASP126

site_id	SWS_FT_FI2
Number of Residues	1
Details	MOD_RES: Phosphothreonine => ECO:0007744\|PubMed:17323924, ECO:0007744\|PubMed:20068231

Chain	Residue	Details
f	THR24
W	LYS368

site_id	SWS_FT_FI3
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:17323924

Chain	Residue	Details
f	SER29

site_id	SWS_FT_FI4
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:23186163

Chain	Residue	Details
f	SER147

site_id	SWS_FT_FI5
Number of Residues	1
Details	MOD_RES: Phosphotyrosine => ECO:0007744\|PubMed:17323924

Chain	Residue	Details
f	TYR194

site_id	SWS_FT_FI6
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:19690332, ECO:0007744\|PubMed:20068231, ECO:0007744\|PubMed:21406692, ECO:0007744\|PubMed:23186163, ECO:0007744\|PubMed:24275569

Chain	Residue	Details
f	SER361

site_id	SWS_FT_FI7
Number of Residues	1
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:24275569

Chain	Residue	Details
f	SER363

site_id	SWS_FT_FI8
Number of Residues	1
Details	MOD_RES: N6-acetyllysine => ECO:0000250\|UniProtKB:Q8VDM4

Chain	Residue	Details
f	LYS551

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)