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5V0X

Crystal structure of glycylpeptide N-tetradecanoyltransferase from Plasmodium vivax in complex with inhibitor IMP-0001114

Functional Information from GO Data
ChainGOidnamespacecontents
A0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
A0006499biological_processN-terminal protein myristoylation
A0016746molecular_functionacyltransferase activity
A0046872molecular_functionmetal ion binding
B0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
B0006499biological_processN-terminal protein myristoylation
B0016746molecular_functionacyltransferase activity
B0046872molecular_functionmetal ion binding
C0004379molecular_functionglycylpeptide N-tetradecanoyltransferase activity
C0006499biological_processN-terminal protein myristoylation
C0016746molecular_functionacyltransferase activity
C0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues37
Detailsbinding site for residue MYA A 501
ChainResidue
ATYR28
ALEU163
ACYS164
AVAL165
AARG170
ASER171
ALYS172
AARG173
ALEU174
AALA175
APRO176
ALYS29
ATHR183
AILE186
ATRP192
AALA194
ATYR196
ATHR197
ALEU202
ATYR393
AHOH614
AHOH617
APHE30
AHOH635
AHOH639
AHOH690
AHOH703
AHOH715
AHOH762
AHOH827
AHOH833
ATRP31
AASN94
ATYR95
AVAL96
AVAL160
APHE162

site_idAC2
Number of Residues21
Detailsbinding site for residue 8RD A 502
ChainResidue
AVAL96
AASP98
APHE103
APHE105
ATYR107
ATHR197
ATYR211
ASER319
ALEU330
AALA332
ATYR334
AVAL363
AASN365
AALA366
ALEU367
ALEU388
ALEU410
AHOH662
AHOH673
AHOH733
AHOH756

site_idAC3
Number of Residues4
Detailsbinding site for residue CL A 503
ChainResidue
ALYS180
ALEU248
AARG358
AHOH616

site_idAC4
Number of Residues6
Detailsbinding site for residue SO4 A 504
ChainResidue
ALYS29
AARG243
AGLU245
AGLN350
AHOH763
AHOH766

site_idAC5
Number of Residues6
Detailsbinding site for residue SO4 A 505
ChainResidue
ASER53
AASP54
AASN55
AHOH620
AHOH702
AHOH802

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 506
ChainResidue
ALYS56
AVAL57
AGLU58
AHOH661

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 A 507
ChainResidue
APRO69
AGLY70
AHOH757

site_idAC8
Number of Residues3
Detailsbinding site for residue SO4 A 508
ChainResidue
ATHR282
ALYS283
AGLU284

site_idAC9
Number of Residues5
Detailsbinding site for residue SO4 A 509
ChainResidue
AASN305
ALYS307
ALYS309
AHOH644
CHIS404

site_idAD1
Number of Residues7
Detailsbinding site for residue SO4 A 510
ChainResidue
ALYS307
AHOH644
AHOH752
AHOH816
CPHE400
CALA401
CHIS404

site_idAD2
Number of Residues38
Detailsbinding site for residue MYA B 501
ChainResidue
BTRP31
BASN94
BTYR95
BVAL96
BVAL160
BPHE162
BLEU163
BCYS164
BVAL165
BARG170
BSER171
BLYS172
BARG173
BLEU174
BALA175
BPRO176
BTHR183
BILE186
BTRP192
BALA194
BTYR196
BTHR197
BLEU202
BTYR393
BHOH614
BHOH629
BHOH653
BHOH719
BHOH722
BHOH734
BHOH762
BHOH763
BHOH779
BHOH810
BHOH852
BTYR28
BLYS29
BPHE30

site_idAD3
Number of Residues22
Detailsbinding site for residue 8RD B 502
ChainResidue
BVAL96
BASP98
BPHE103
BPHE105
BTYR107
BTHR197
BTYR211
BPHE226
BSER319
BLEU330
BALA332
BTYR334
BVAL363
BASN365
BALA366
BLEU367
BLEU388
BLEU409
BLEU410
BHOH626
BHOH643
BHOH740

site_idAD4
Number of Residues4
Detailsbinding site for residue CL B 503
ChainResidue
BLYS180
BLEU248
BARG358
BHOH636

site_idAD5
Number of Residues9
Detailsbinding site for residue SO4 B 504
ChainResidue
BARG243
BVAL244
BGLU245
BGLN350
BHOH716
BHOH733
BHOH745
BHOH771
BHOH822

site_idAD6
Number of Residues5
Detailsbinding site for residue SO4 B 505
ChainResidue
BSER53
BASP54
BASN55
BHOH646
BHOH701

site_idAD7
Number of Residues5
Detailsbinding site for residue SO4 B 506
ChainResidue
AASN230
ASER231
BLYS56
BVAL57
BGLU58

site_idAD8
Number of Residues5
Detailsbinding site for residue SO4 B 507
ChainResidue
BHIS265
BTHR282
BLYS283
BGLU284
BHOH749

site_idAD9
Number of Residues2
Detailsbinding site for residue SO4 B 508
ChainResidue
BHIS288
BHOH718

site_idAE1
Number of Residues34
Detailsbinding site for residue MYA C 501
ChainResidue
CTYR28
CLYS29
CPHE30
CTRP31
CASN94
CTYR95
CVAL96
CPHE162
CLEU163
CCYS164
CVAL165
CARG170
CSER171
CLYS172
CARG173
CLEU174
CALA175
CPRO176
CTHR183
CILE186
CASN187
CTRP192
CALA194
CTYR196
CTHR197
CLEU202
CTYR393
CHOH616
CHOH623
CHOH637
CHOH688
CHOH717
CHOH721
CHOH775

site_idAE2
Number of Residues20
Detailsbinding site for residue 8RD C 502
ChainResidue
CVAL96
CASP98
CPHE103
CPHE105
CTYR107
CTHR197
CTYR211
CSER319
CLEU330
CTYR334
CVAL363
CASN365
CALA366
CLEU367
CLEU388
CLEU409
CLEU410
CHOH625
CHOH759
CHOH798

site_idAE3
Number of Residues4
Detailsbinding site for residue CL C 503
ChainResidue
CLYS180
CTHR247
CLEU248
CARG358

site_idAE4
Number of Residues6
Detailsbinding site for residue SO4 C 504
ChainResidue
CSER53
CASP54
CASN55
CHOH601
CHOH611
CHOH668

site_idAE5
Number of Residues5
Detailsbinding site for residue SO4 C 505
ChainResidue
CHIS265
CTHR282
CLYS283
CHOH684
CHOH767

site_idAE6
Number of Residues3
Detailsbinding site for residue SO4 C 506
ChainResidue
CASN305
CLYS307
CLYS309

site_idAE7
Number of Residues3
Detailsbinding site for residue SO4 C 507
ChainResidue
CHIS213
CSER215
CHOH607

site_idAE8
Number of Residues6
Detailsbinding site for residue SO4 C 508
ChainResidue
BASN230
BSER231
CLYS56
CVAL57
CGLU58
CHOH706

Functional Information from PROSITE/UniProt
site_idPS00975
Number of Residues9
DetailsNMT_1 Myristoyl-CoA:protein N-myristoyltransferase signature 1. EVNFLCvHK
ChainResidueDetails
AGLU159-LYS167

site_idPS00976
Number of Residues7
DetailsNMT_2 Myristoyl-CoA:protein N-myristoyltransferase signature 2. KFGeGDG
ChainResidueDetails
ALYS380-GLY386

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PDB entries from 2024-07-17

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