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5UZH

Crystal structure of a GDP-mannose dehydratase from Naegleria fowleri

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0005737cellular_componentcytoplasm
A0008446molecular_functionGDP-mannose 4,6-dehydratase activity
A0019673biological_processGDP-mannose metabolic process
A0042350biological_processGDP-L-fucose biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues22
Detailsbinding site for residue GDP A 401
ChainResidue
AVAL123
AASN251
AALA254
AARG256
AVAL290
ATYR332
AARG334
AGLU337
AHOH506
AHOH522
AHOH545
AGLU166
AHOH557
AHOH584
AHOH598
AASN217
ATHR226
APHE227
AVAL228
ALYS231
ALEU249
AGLY250

site_idAC2
Number of Residues40
Detailsbinding site for residue NAP A 402
ChainResidue
AGLY40
ATHR42
AGLY43
AGLN44
AASP45
AARG65
AARG66
ASER67
ASER68
AASN71
AASP95
ALEU96
ALEU117
AALA118
AALA119
ASER121
ATYR132
AVAL136
AALA162
ASER163
ATHR164
ATYR188
ALYS192
ALEU215
AASN217
AHIS218
AARG223
AHOH502
AHOH504
AHOH509
AHOH537
AHOH539
AHOH555
AHOH566
AHOH567
AHOH569
AHOH586
AHOH601
AHOH604
AHOH628

site_idAC3
Number of Residues7
Detailsbinding site for residue MPD A 403
ChainResidue
AGLU178
ATHR179
ATYR183
ATYR196
AHOH532
AHOH578
AHOH589

site_idAC4
Number of Residues7
Detailsbinding site for residue MPD A 404
ChainResidue
AGLU178
ATHR179
ATHR180
APRO181
APHE182
ATYR196
AHOH609

site_idAC5
Number of Residues4
Detailsbinding site for residue MPD A 405
ChainResidue
AALA150
AALA150
ACYS151
ACYS151

site_idAC6
Number of Residues1
Detailsbinding site for residue CL A 406
ChainResidue
ALEU91

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. PqkettpfypRspYACAKLYSyWIVvNYR
ChainResidueDetails
APRO175-ARG203

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PDB entries from 2024-07-24

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