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5UP7

Crystal Structure of the Ni-bound Human Heavy-Chain Ferritin 122H-delta C-star variant

Functional Information from GO Data
ChainGOidnamespacecontents
A0004322molecular_functionferroxidase activity
A0005506molecular_functioniron ion binding
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005634cellular_componentnucleus
A0005737cellular_componentcytoplasm
A0005764cellular_componentlysosome
A0005776cellular_componentautophagosome
A0005829cellular_componentcytosol
A0006826biological_processiron ion transport
A0006879biological_processintracellular iron ion homeostasis
A0006955biological_processimmune response
A0008198molecular_functionferrous iron binding
A0008199molecular_functionferric iron binding
A0008285biological_processnegative regulation of cell population proliferation
A0016491molecular_functionoxidoreductase activity
A0031410cellular_componentcytoplasmic vesicle
A0042802molecular_functionidentical protein binding
A0044754cellular_componentautolysosome
A0046872molecular_functionmetal ion binding
A0048147biological_processnegative regulation of fibroblast proliferation
A0070062cellular_componentextracellular exosome
A0070288cellular_componentferritin complex
A0110076biological_processnegative regulation of ferroptosis
A0140315molecular_functioniron ion sequestering activity
A1904724cellular_componenttertiary granule lumen
A1904813cellular_componentficolin-1-rich granule lumen
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue NI A 201
ChainResidue
AGLU27
AGLU62
AHIS65
AHOH312
AHOH348

site_idAC2
Number of Residues6
Detailsbinding site for residue NI A 202
ChainResidue
AHOH443
AHOH467
AGLU62
AGLU107
AHOH310
AHOH425

site_idAC3
Number of Residues6
Detailsbinding site for residue NI A 203
ChainResidue
AHIS122
AHIS122
AHIS122
AHOH481
AHOH481
AHOH481

site_idAC4
Number of Residues12
Detailsbinding site for residue NI A 204
ChainResidue
AHIS173
AHIS173
AHIS173
AHIS173
ACL208
ACL208
ACL208
ACL208
AHOH484
AHOH484
AHOH484
AHOH484

site_idAC5
Number of Residues1
Detailsbinding site for residue NI A 205
ChainResidue
AHIS105

site_idAC6
Number of Residues6
Detailsbinding site for residue CA A 206
ChainResidue
AASP84
AASP84
AGLN86
AGLN86
AHOH546
AHOH546

site_idAC7
Number of Residues6
Detailsbinding site for residue CA A 207
ChainResidue
AASP131
AASP131
AASP131
AGLU134
AGLU134
AGLU134

site_idAC8
Number of Residues8
Detailsbinding site for residue CL A 208
ChainResidue
AHIS173
AHIS173
AHIS173
AHIS173
ANI204
ANI204
ANI204
ANI204

site_idAC9
Number of Residues3
Detailsbinding site for residue EDO A 209
ChainResidue
ATYR40
AARG43
AASP92

Functional Information from PROSITE/UniProt
site_idPS00204
Number of Residues21
DetailsFERRITIN_2 Ferritin iron-binding regions signature 2. DphLADFIEthYLneqvkaIK
ChainResidueDetails
AASP126-LYS146

site_idPS00540
Number of Residues19
DetailsFERRITIN_1 Ferritin iron-binding regions signature 1. EeREhaEKLMklQNqRgGR
ChainResidueDetails
AGLU61-ARG79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues149
DetailsDomain: {"description":"Ferritin-like diiron","evidences":[{"source":"PROSITE-ProRule","id":"PRU00085","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"1992356","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1FHA","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues3
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00085","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues1
DetailsSite: {"description":"Essential for association with cargo receptor NCOA4","evidences":[{"source":"PubMed","id":"26436293","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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