5UEJ
1.30 A crystal structure of DapE enzyme from Neisseria meningitidis MC58
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0006526 | biological_process | arginine biosynthetic process |
| A | 0008270 | molecular_function | zinc ion binding |
| A | 0008777 | molecular_function | acetylornithine deacetylase activity |
| A | 0009014 | molecular_function | succinyl-diaminopimelate desuccinylase activity |
| A | 0009085 | biological_process | lysine biosynthetic process |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0019877 | biological_process | diaminopimelate biosynthetic process |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0050897 | molecular_function | cobalt ion binding |
| B | 0006526 | biological_process | arginine biosynthetic process |
| B | 0008270 | molecular_function | zinc ion binding |
| B | 0008777 | molecular_function | acetylornithine deacetylase activity |
| B | 0009014 | molecular_function | succinyl-diaminopimelate desuccinylase activity |
| B | 0009085 | biological_process | lysine biosynthetic process |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0019877 | biological_process | diaminopimelate biosynthetic process |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0050897 | molecular_function | cobalt ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 5 |
| Details | binding site for residue ZN A 401 |
| Chain | Residue |
| A | HIS68 |
| A | ASP101 |
| A | GLU164 |
| A | ZN402 |
| A | HOH857 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue ZN A 402 |
| Chain | Residue |
| A | HOH857 |
| A | ASP101 |
| A | GLU136 |
| A | HIS350 |
| A | ZN401 |
| site_id | AC3 |
| Number of Residues | 8 |
| Details | binding site for residue SO4 A 403 |
| Chain | Residue |
| A | ARG179 |
| A | GLY325 |
| A | ASN346 |
| A | HOH539 |
| A | HOH634 |
| A | HOH665 |
| A | HOH748 |
| B | TYR198 |
| site_id | AC4 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 404 |
| Chain | Residue |
| A | SER182 |
| A | ARG259 |
| A | SER291 |
| A | HOH523 |
| A | HOH602 |
| A | HOH673 |
| A | HOH765 |
| site_id | AC5 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 401 |
| Chain | Residue |
| B | ASP101 |
| B | GLU136 |
| B | HIS350 |
| B | ZN402 |
| B | HOH863 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 402 |
| Chain | Residue |
| B | HIS68 |
| B | ASP101 |
| B | GLU164 |
| B | ZN401 |
| B | HOH863 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue ZN B 403 |
| Chain | Residue |
| B | HIS120 |
| B | GLU223 |
| B | HOH793 |
| B | HOH882 |
| B | HOH965 |
| site_id | AC8 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 B 404 |
| Chain | Residue |
| B | SER182 |
| B | ARG259 |
| B | SER291 |
| B | HOH523 |
| B | HOH547 |
| B | HOH561 |
| B | HOH670 |
| B | HOH713 |
| B | HOH743 |
| B | HOH806 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 405 |
| Chain | Residue |
| A | TYR198 |
| B | ARG179 |
| B | GLY325 |
| B | HOH506 |
| B | HOH544 |
| B | HOH567 |
| B | HOH815 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 B 406 |
| Chain | Residue |
| B | ARG374 |
| B | HOH588 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | ACT_SITE: ACT_SITE => ECO:0000250 |
| Chain | Residue | Details |
| A | ASP70 | |
| B | ASP70 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | ACT_SITE: Proton acceptor => ECO:0000250 |
| Chain | Residue | Details |
| A | GLU135 | |
| B | GLU135 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 10 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| A | HIS68 | |
| B | HIS350 | |
| A | ASP101 | |
| A | GLU136 | |
| A | GLU164 | |
| A | HIS350 | |
| B | HIS68 | |
| B | ASP101 | |
| B | GLU136 | |
| B | GLU164 |
