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5U9P

Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008874molecular_functiongluconate 5-dehydrogenase activity
A0016491molecular_functionoxidoreductase activity
B0000166molecular_functionnucleotide binding
B0008874molecular_functiongluconate 5-dehydrogenase activity
B0016491molecular_functionoxidoreductase activity
C0000166molecular_functionnucleotide binding
C0008874molecular_functiongluconate 5-dehydrogenase activity
C0016491molecular_functionoxidoreductase activity
D0000166molecular_functionnucleotide binding
D0008874molecular_functiongluconate 5-dehydrogenase activity
D0016491molecular_functionoxidoreductase activity
Functional Information from PDB Data
site_idAC1
Number of Residues35
Detailsbinding site for residue NAP A 301
ChainResidue
AGLY19
AGLY98
AVAL119
AILE146
ACYS147
ATYR161
ALYS165
APRO191
AGLY192
ATYR193
APHE194
AARG22
ATHR196
ALEU198
AASN199
ATLA302
AHOH413
AHOH420
AHOH422
AHOH423
AHOH434
AHOH437
AGLY23
AHOH449
AHOH462
AHOH530
AHOH554
AHOH557
AHOH563
AILE24
AARG44
AASP69
AVAL70
AASN96
AALA97

site_idAC2
Number of Residues12
Detailsbinding site for residue TLA A 302
ChainResidue
AGLN100
AARG102
ASER148
AGLN150
AARG155
AILE158
ATYR161
ATYR193
ALEU198
AASN199
ALEU202
ANAP301

site_idAC3
Number of Residues9
Detailsbinding site for residue TLA A 303
ChainResidue
AALA71
AGLU72
AHIS73
AARG118
AEDO304
AHOH409
AHOH427
AHOH465
AHOH506

site_idAC4
Number of Residues4
Detailsbinding site for residue EDO A 304
ChainResidue
AALA71
AASN126
ATLA303
BHOH409

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 305
ChainResidue
AARG54
AARG57
AHOH407
AHOH461

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 306
ChainResidue
AARG155
ATRP211
AHOH402
AHOH421
AHOH565

site_idAC7
Number of Residues33
Detailsbinding site for residue NAP B 301
ChainResidue
BHOH516
BHOH521
BHOH534
BGLY19
BARG22
BGLY23
BILE24
BARG44
BASP69
BVAL70
BASN96
BALA97
BGLY98
BVAL119
BILE146
BCYS147
BTYR161
BLYS165
BPRO191
BGLY192
BPHE194
BTHR196
BLEU198
BASN199
BTLA302
BHOH414
BHOH422
BHOH424
BHOH433
BHOH440
BHOH489
BHOH500
BHOH504

site_idAC8
Number of Residues11
Detailsbinding site for residue TLA B 302
ChainResidue
BGLN100
BARG102
BSER148
BGLN150
BARG155
BILE158
BTYR161
BTYR193
BASN199
BLEU202
BNAP301

site_idAC9
Number of Residues12
Detailsbinding site for residue TLA B 303
ChainResidue
BALA71
BGLU72
BHIS73
BARG118
BEDO305
BHOH425
BHOH427
BHOH439
BHOH443
BHOH459
BHOH466
BHOH486

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO B 304
ChainResidue
AGLU84
AALA85
AHOH469
AHOH477
BARG30

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO B 305
ChainResidue
BALA71
BASN126
BTLA303

site_idAD3
Number of Residues3
Detailsbinding site for residue EDO B 306
ChainResidue
BARG155
BPRO156
DHOH438

site_idAD4
Number of Residues35
Detailsbinding site for residue NAP C 301
ChainResidue
CGLY19
CARG22
CGLY23
CILE24
CARG44
CASP69
CVAL70
CASN96
CALA97
CGLY98
CVAL119
CILE146
CCYS147
CTYR161
CLYS165
CPRO191
CGLY192
CTYR193
CPHE194
CTHR196
CLEU198
CASN199
CTLA302
CHOH405
CHOH411
CHOH421
CHOH422
CHOH439
CHOH459
CHOH460
CHOH477
CHOH478
CHOH531
CHOH550
CHOH588

site_idAD5
Number of Residues11
Detailsbinding site for residue TLA C 302
ChainResidue
CGLN100
CARG102
CSER148
CGLN150
CARG155
CILE158
CTYR161
CTYR193
CASN199
CLEU202
CNAP301

site_idAD6
Number of Residues12
Detailsbinding site for residue TLA C 303
ChainResidue
CALA71
CGLU72
CHIS73
CARG118
CEDO305
CHOH403
CHOH413
CHOH420
CHOH432
CHOH448
CHOH474
CHOH494

site_idAD7
Number of Residues7
Detailsbinding site for residue EDO C 304
ChainResidue
CARG30
CPHE56
CGLU59
CHOH435
DALA85
DHIS134
DHOH447

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO C 305
ChainResidue
CALA71
CASN126
CTLA303

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO C 306
ChainResidue
CTHR27
CARG30
CGLU34
CCYS228
CHOH599
DARG77

site_idAE1
Number of Residues35
Detailsbinding site for residue NAP D 301
ChainResidue
DGLY19
DARG22
DGLY23
DILE24
DARG44
DASP69
DVAL70
DASN96
DALA97
DGLY98
DVAL119
DILE146
DCYS147
DTYR161
DLYS165
DPRO191
DGLY192
DPHE194
DTHR196
DLEU198
DASN199
DTLA302
DHOH423
DHOH424
DHOH430
DHOH442
DHOH446
DHOH455
DHOH459
DHOH470
DHOH478
DHOH495
DHOH522
DHOH533
DHOH537

site_idAE2
Number of Residues12
Detailsbinding site for residue TLA D 302
ChainResidue
DGLN100
DARG102
DSER148
DGLN150
DARG155
DILE158
DTYR161
DTYR193
DLEU198
DASN199
DLEU202
DNAP301

site_idAE3
Number of Residues10
Detailsbinding site for residue TLA D 303
ChainResidue
DALA71
DGLU72
DHIS73
DARG118
DEDO304
DHOH404
DHOH441
DHOH462
DHOH474
DHOH480

site_idAE4
Number of Residues5
Detailsbinding site for residue EDO D 304
ChainResidue
CHIS114
CHOH412
DALA71
DASN126
DTLA303

Functional Information from PROSITE/UniProt
site_idPS00061
Number of Residues29
DetailsADH_SHORT Short-chain dehydrogenases/reductases family signature. SvqselarptIapYAATKGAVrMLTkGMC
ChainResidueDetails
ASER148-CYS176

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PDB entries from 2024-11-13

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