5U7K
PDE2 catalytic domain complexed with inhibitors
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
| A | 0007165 | biological_process | signal transduction |
| A | 0008081 | molecular_function | phosphoric diester hydrolase activity |
| B | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
| B | 0007165 | biological_process | signal transduction |
| B | 0008081 | molecular_function | phosphoric diester hydrolase activity |
| C | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
| C | 0007165 | biological_process | signal transduction |
| C | 0008081 | molecular_function | phosphoric diester hydrolase activity |
| D | 0004114 | molecular_function | 3',5'-cyclic-nucleotide phosphodiesterase activity |
| D | 0007165 | biological_process | signal transduction |
| D | 0008081 | molecular_function | phosphoric diester hydrolase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue ZN A 1001 |
| Chain | Residue |
| A | HIS660 |
| A | HIS696 |
| A | ASP697 |
| A | ASP808 |
| A | HOH1106 |
| A | HOH1142 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 1002 |
| Chain | Residue |
| A | HOH1144 |
| A | HOH1178 |
| A | HOH1182 |
| A | ASP697 |
| A | HOH1101 |
| A | HOH1106 |
| site_id | AC3 |
| Number of Residues | 9 |
| Details | binding site for residue 7Y1 A 1003 |
| Chain | Residue |
| A | LEU770 |
| A | ASP808 |
| A | ILE826 |
| A | PHE830 |
| A | GLN859 |
| A | PHE862 |
| A | HOH1132 |
| A | HOH1162 |
| A | HOH1199 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue ZN B 1001 |
| Chain | Residue |
| B | HIS660 |
| B | HIS696 |
| B | ASP697 |
| B | ASP808 |
| B | HOH1168 |
| B | HOH1173 |
| site_id | AC5 |
| Number of Residues | 6 |
| Details | binding site for residue MG B 1002 |
| Chain | Residue |
| B | ASP697 |
| B | HOH1113 |
| B | HOH1126 |
| B | HOH1168 |
| B | HOH1185 |
| B | HOH1191 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | binding site for residue 7Y1 B 1003 |
| Chain | Residue |
| B | LEU770 |
| B | ASP808 |
| B | LEU809 |
| B | ILE826 |
| B | PHE830 |
| B | GLN859 |
| B | PHE862 |
| B | HOH1135 |
| B | HOH1162 |
| B | HOH1178 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue ZN C 1001 |
| Chain | Residue |
| C | HIS660 |
| C | HIS696 |
| C | ASP697 |
| C | ASP808 |
| C | HOH1132 |
| C | HOH1178 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue MG C 1002 |
| Chain | Residue |
| C | ASP697 |
| C | HOH1129 |
| C | HOH1131 |
| C | HOH1132 |
| C | HOH1157 |
| C | HOH1184 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue CL C 1003 |
| Chain | Residue |
| C | ALA717 |
| C | SER720 |
| C | SER721 |
| D | ARG762 |
| site_id | AD1 |
| Number of Residues | 12 |
| Details | binding site for residue 7Y1 C 1004 |
| Chain | Residue |
| C | LEU770 |
| C | HIS773 |
| C | THR805 |
| C | ASP808 |
| C | LEU809 |
| C | ILE826 |
| C | PHE830 |
| C | GLN859 |
| C | PHE862 |
| C | HOH1137 |
| C | HOH1168 |
| C | HOH1211 |
| site_id | AD2 |
| Number of Residues | 6 |
| Details | binding site for residue ZN D 1001 |
| Chain | Residue |
| D | HIS660 |
| D | HIS696 |
| D | ASP697 |
| D | ASP808 |
| D | HOH1109 |
| D | HOH1140 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue MG D 1002 |
| Chain | Residue |
| D | ASP697 |
| D | HOH1108 |
| D | HOH1109 |
| D | HOH1118 |
| D | HOH1121 |
| D | HOH1194 |
| site_id | AD4 |
| Number of Residues | 10 |
| Details | binding site for residue 7Y1 D 1003 |
| Chain | Residue |
| D | LEU770 |
| D | HIS773 |
| D | THR805 |
| D | ASP808 |
| D | PHE830 |
| D | GLN859 |
| D | PHE862 |
| D | HOH1113 |
| D | HOH1163 |
| D | HOH1178 |
Functional Information from PROSITE/UniProt
| site_id | PS00126 |
| Number of Residues | 12 |
| Details | PDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHrGtnNsF |
| Chain | Residue | Details |
| A | HIS696-PHE707 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | Active site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"O76083","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3IBJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
