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5U7J

PDE2 catalytic domain complexed with inhibitors

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
C0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
C0007165biological_processsignal transduction
C0008081molecular_functionphosphoric diester hydrolase activity
D0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
D0007165biological_processsignal transduction
D0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues9
Detailsbinding site for residue 7XV A 1001
ChainResidue
AHIS656
ALEU770
ALEU809
AILE826
AMET847
AGLN859
APHE862
AHOH1176
AHOH1233

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 1002
ChainResidue
AHIS660
AHIS696
AASP697
AASP808
AHOH1111
AHOH1210

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 1003
ChainResidue
AASP697
AHOH1106
AHOH1111
AHOH1200
AHOH1217
AHOH1261

site_idAC4
Number of Residues10
Detailsbinding site for residue 7XV B 1001
ChainResidue
BHIS656
BLEU770
BLEU809
BILE826
BMET847
BGLN859
BPHE862
BILE866
BHOH1207
BHOH1260

site_idAC5
Number of Residues6
Detailsbinding site for residue ZN B 1002
ChainResidue
BHIS660
BHIS696
BASP697
BASP808
BHOH1124
BHOH1203

site_idAC6
Number of Residues6
Detailsbinding site for residue MG B 1003
ChainResidue
BASP697
BHOH1106
BHOH1124
BHOH1200
BHOH1211
BHOH1225

site_idAC7
Number of Residues11
Detailsbinding site for residue 7XV C 1001
ChainResidue
CHIS656
CLEU770
CLEU809
CILE826
CPHE830
CMET847
CGLN859
CPHE862
CHOH1138
CHOH1185
CHOH1220

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN C 1002
ChainResidue
CHIS660
CHIS696
CASP697
CASP808
CHOH1122
CHOH1133

site_idAC9
Number of Residues6
Detailsbinding site for residue MG C 1003
ChainResidue
CASP697
CHOH1101
CHOH1122
CHOH1161
CHOH1186
CHOH1207

site_idAD1
Number of Residues11
Detailsbinding site for residue 7XV D 1001
ChainResidue
AGLN591
DHIS656
DLEU770
DLEU809
DILE826
DMET847
DGLN859
DPHE862
DHOH1166
DHOH1248
DHOH1252

site_idAD2
Number of Residues6
Detailsbinding site for residue ZN D 1002
ChainResidue
DHIS660
DHIS696
DASP697
DASP808
DHOH1115
DHOH1213

site_idAD3
Number of Residues6
Detailsbinding site for residue MG D 1003
ChainResidue
DASP697
DHOH1102
DHOH1113
DHOH1115
DHOH1200
DHOH1236

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHrGtnNsF
ChainResidueDetails
AHIS696-PHE707

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"O76083","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3IBJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246704

PDB entries from 2025-12-24

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