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5U7I

PDE2 catalytic domain complexed with inhibitors

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
C0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
C0007165biological_processsignal transduction
C0008081molecular_functionphosphoric diester hydrolase activity
D0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
D0007165biological_processsignal transduction
D0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue 7XS A 1001
ChainResidue
ATYR655
AHOH1113
AHOH1241
AHIS656
ALEU774
ALEU809
AGLN812
AILE826
AGLN859
APHE862
AILE866

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 1002
ChainResidue
AHIS660
AHIS696
AASP697
AASP808
AHOH1129
AHOH1197

site_idAC3
Number of Residues6
Detailsbinding site for residue MG A 1003
ChainResidue
AASP697
AHOH1102
AHOH1129
AHOH1179
AHOH1188
AHOH1237

site_idAC4
Number of Residues8
Detailsbinding site for residue 7XS B 1001
ChainResidue
BTYR655
BLEU809
BGLN812
BILE826
BGLN859
BPHE862
BILE866
BHOH1175

site_idAC5
Number of Residues6
Detailsbinding site for residue ZN B 1002
ChainResidue
BHIS660
BHIS696
BASP697
BASP808
BHOH1101
BHOH1201

site_idAC6
Number of Residues6
Detailsbinding site for residue MG B 1003
ChainResidue
BASP697
BHOH1101
BHOH1103
BHOH1114
BHOH1165
BHOH1206

site_idAC7
Number of Residues11
Detailsbinding site for residue 7XS C 1001
ChainResidue
BGLY589
CTYR655
CHIS656
CLEU809
CGLN812
CILE826
CPHE830
CGLN859
CPHE862
CILE866
CHOH1182

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN C 1002
ChainResidue
CHIS660
CHIS696
CASP697
CASP808
CHOH1104
CHOH1235

site_idAC9
Number of Residues6
Detailsbinding site for residue MG C 1003
ChainResidue
CASP697
CHOH1102
CHOH1104
CHOH1146
CHOH1216
CHOH1245

site_idAD1
Number of Residues9
Detailsbinding site for residue 7XS D 1001
ChainResidue
AGLN591
DTYR655
DLEU774
DLEU809
DGLN812
DILE826
DGLN859
DPHE862
DHOH1173

site_idAD2
Number of Residues6
Detailsbinding site for residue ZN D 1002
ChainResidue
DHIS660
DHIS696
DASP697
DASP808
DHOH1150
DHOH1190

site_idAD3
Number of Residues6
Detailsbinding site for residue MG D 1003
ChainResidue
DASP697
DHOH1104
DHOH1118
DHOH1150
DHOH1208
DHOH1227

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHrGtnNsF
ChainResidueDetails
AHIS696-PHE707

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"O76083","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3IBJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

245663

PDB entries from 2025-12-03

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