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5TZ3

CRYSTAL STRUCTURE OF HUMAN PHOSPHODIESTERASE 2A IN COMPLEX with [1,2,4]triazolo[1,5-a]pyrimidin-7-yl}-N-(naphthalene-2-yl)piperidine-3-carboxamide

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
C0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
C0007165biological_processsignal transduction
C0008081molecular_functionphosphoric diester hydrolase activity
D0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
D0007165biological_processsignal transduction
D0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues11
Detailsbinding site for residue 7OM A 1001
ChainResidue
ATYR655
AILE866
AHOH1285
ALEU770
AGLN812
AILE826
APHE830
AMET847
ALEU858
AGLN859
APHE862

site_idAC2
Number of Residues7
Detailsbinding site for residue ZN A 1002
ChainResidue
AHIS660
AHIS696
AASP697
AASP808
AMG1003
AHOH1139
AHOH1203

site_idAC3
Number of Residues7
Detailsbinding site for residue MG A 1003
ChainResidue
AASP697
AZN1002
AHOH1135
AHOH1139
AHOH1177
AHOH1182
AHOH1221

site_idAC4
Number of Residues11
Detailsbinding site for residue 7OM B 1001
ChainResidue
BTYR655
BLEU770
BGLN812
BILE826
BPHE830
BMET847
BLEU858
BGLN859
BSER861
BPHE862
BHOH1280

site_idAC5
Number of Residues7
Detailsbinding site for residue ZN B 1002
ChainResidue
BHIS660
BHIS696
BASP697
BASP808
BMG1003
BHOH1121
BHOH1190

site_idAC6
Number of Residues7
Detailsbinding site for residue MG B 1003
ChainResidue
BASP697
BZN1002
BHOH1121
BHOH1127
BHOH1129
BHOH1175
BHOH1220

site_idAC7
Number of Residues12
Detailsbinding site for residue 7OM C 1001
ChainResidue
CTYR655
CLEU809
CGLN812
CILE826
CPHE830
CMET847
CLEU858
CGLN859
CSER861
CPHE862
CILE866
CHOH1227

site_idAC8
Number of Residues6
Detailsbinding site for residue ZN C 1002
ChainResidue
CHIS660
CHIS696
CASP697
CASP808
CHOH1114
CHOH1139

site_idAC9
Number of Residues6
Detailsbinding site for residue MG C 1003
ChainResidue
CASP697
CHOH1114
CHOH1121
CHOH1176
CHOH1187
CHOH1211

site_idAD1
Number of Residues10
Detailsbinding site for residue 7OM D 1001
ChainResidue
DTYR655
DLEU770
DLEU809
DGLN812
DILE826
DPHE830
DMET847
DLEU858
DGLN859
DPHE862

site_idAD2
Number of Residues7
Detailsbinding site for residue ZN D 1002
ChainResidue
DHIS660
DHIS696
DASP697
DASP808
DMG1003
DHOH1122
DHOH1168

site_idAD3
Number of Residues7
Detailsbinding site for residue MG D 1003
ChainResidue
DASP697
DZN1002
DHOH1151
DHOH1168
DHOH1194
DHOH1213
DHOH1234

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHrGtnNsF
ChainResidueDetails
AHIS696-PHE707

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton donor","evidences":[{"source":"UniProtKB","id":"O76083","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3IBJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"15938621","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19828435","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23899287","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1Z1L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITM","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ITU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4HTZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4JIB","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

246333

PDB entries from 2025-12-17

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