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5TNU

S. tokodaii XPB II crystal structure at 3.0 Angstrom resolution

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004386molecular_functionhelicase activity
A0005524molecular_functionATP binding
A0006281biological_processDNA repair
A0016787molecular_functionhydrolase activity
A0016853molecular_functionisomerase activity
A0071103biological_processDNA conformation change
A0140097molecular_functioncatalytic activity, acting on DNA
B0003677molecular_functionDNA binding
B0004386molecular_functionhelicase activity
B0005524molecular_functionATP binding
B0006281biological_processDNA repair
B0016787molecular_functionhydrolase activity
B0016853molecular_functionisomerase activity
B0071103biological_processDNA conformation change
B0140097molecular_functioncatalytic activity, acting on DNA
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue SO4 A 501
ChainResidue
ATHR92
AGLY93
AALA94
AGLY95
ALYS96

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 502
ChainResidue
ATYR131
AGLY95
ATHR97
AGLN98
AARG127

site_idAC3
Number of Residues3
Detailsbinding site for residue SO4 A 503
ChainResidue
AARG70
AARG253
ALEU257

site_idAC4
Number of Residues6
Detailsbinding site for residue SO4 A 504
ChainResidue
ALYS64
ALYS66
AASP133
AGLN189
ALEU212
AILE215

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 505
ChainResidue
AGLY140
AGLY142
AGLU143
BASP155

site_idAC6
Number of Residues6
Detailsbinding site for residue SO4 A 506
ChainResidue
AARG258
ATRP298
AALA429
AARG432
AARG436
AARG437

site_idAC7
Number of Residues4
Detailsbinding site for residue SO4 A 507
ChainResidue
ATYR254
AARG258
AGLY427
AARG432

site_idAC8
Number of Residues4
Detailsbinding site for residue CL A 508
ChainResidue
ATHR117
AILE118
BTHR117
BILE118

site_idAC9
Number of Residues3
Detailsbinding site for residue CL A 509
ChainResidue
AARG127
ALYS130
ATYR131

site_idAD1
Number of Residues1
Detailsbinding site for residue CL A 510
ChainResidue
AARG436

site_idAD2
Number of Residues1
Detailsbinding site for residue CL A 511
ChainResidue
ASER181

site_idAD3
Number of Residues1
Detailsbinding site for residue CL A 512
ChainResidue
AGLU182

site_idAD4
Number of Residues3
Detailsbinding site for residue GOL A 513
ChainResidue
ALYS8
AILE63
AGLU162

site_idAD5
Number of Residues5
Detailsbinding site for residue GOL A 514
ChainResidue
AGLU25
ASER105
ALYS108
AHOH602
AHOH614

site_idAD6
Number of Residues5
Detailsbinding site for residue GOL A 515
ChainResidue
ATYR16
AGLY19
AASN248
AGLU249
AHOH613

site_idAD7
Number of Residues3
Detailsbinding site for residue GOL A 516
ChainResidue
ATYR237
AILE239
ALYS283

site_idAD8
Number of Residues3
Detailsbinding site for residue GOL A 517
ChainResidue
AASN129
AASP133
AGLU182

site_idAD9
Number of Residues4
Detailsbinding site for residue GOL A 518
ChainResidue
AARG37
ALYS41
AGLU83
AHOH649

site_idAE1
Number of Residues6
Detailsbinding site for residue SO4 B 501
ChainResidue
BTHR92
BGLY93
BALA94
BGLY95
BLYS96
BTHR97

site_idAE2
Number of Residues5
Detailsbinding site for residue SO4 B 502
ChainResidue
BLYS64
BLYS66
BASP133
BGLN189
BLEU212

site_idAE3
Number of Residues6
Detailsbinding site for residue SO4 B 503
ChainResidue
AASP155
BGLY140
BGLY141
BGLY142
BGLU143
BSER156

site_idAE4
Number of Residues3
Detailsbinding site for residue SO4 B 504
ChainResidue
BGLN98
BARG127
BTYR131

site_idAE5
Number of Residues4
Detailsbinding site for residue SO4 B 505
ChainResidue
BILE63
BLYS108
BLEU190
BHOH621

site_idAE6
Number of Residues2
Detailsbinding site for residue CL B 506
ChainResidue
BSER181
BARG205

site_idAE7
Number of Residues8
Detailsbinding site for residue GOL B 508
ChainResidue
BHOH614
AASP56
ALEU58
ALEU146
ALYS167
BLEU146
BGLU163
BLYS167

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541, ECO:0000305|PubMed:32986831
ChainResidueDetails
ALEU90
BLEU90

site_idSWS_FT_FI2
Number of Residues2
DetailsBINDING: BINDING => ECO:0000305|PubMed:32986831
ChainResidueDetails
AARG127
BARG127

site_idSWS_FT_FI3
Number of Residues2
DetailsSITE: Wedge residue => ECO:0000269|PubMed:32986831
ChainResidueDetails
APHE278
BPHE278

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PDB entries from 2024-07-24

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