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5THP

Rhodocetin in complex with the integrin alpha2-A domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0008284biological_processpositive regulation of cell population proliferation
A0035821biological_processmodulation of process of another organism
A0038023molecular_functionsignaling receptor activity
A0042834molecular_functionpeptidoglycan binding
A0043434biological_processresponse to peptide hormone
A0044278biological_processdisruption of cell wall in another organism
A0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
A0062023cellular_componentcollagen-containing extracellular matrix
A0070492molecular_functionoligosaccharide binding
A0090729molecular_functiontoxin activity
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0008284biological_processpositive regulation of cell population proliferation
B0035821biological_processmodulation of process of another organism
B0038023molecular_functionsignaling receptor activity
B0042834molecular_functionpeptidoglycan binding
B0043434biological_processresponse to peptide hormone
B0044278biological_processdisruption of cell wall in another organism
B0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
B0062023cellular_componentcollagen-containing extracellular matrix
B0070492molecular_functionoligosaccharide binding
B0090729molecular_functiontoxin activity
D0005576cellular_componentextracellular region
D0005615cellular_componentextracellular space
D0008284biological_processpositive regulation of cell population proliferation
D0035821biological_processmodulation of process of another organism
D0038023molecular_functionsignaling receptor activity
D0042834molecular_functionpeptidoglycan binding
D0043434biological_processresponse to peptide hormone
D0044278biological_processdisruption of cell wall in another organism
D0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
D0062023cellular_componentcollagen-containing extracellular matrix
D0070492molecular_functionoligosaccharide binding
D0090729molecular_functiontoxin activity
E0005576cellular_componentextracellular region
E0005615cellular_componentextracellular space
E0008284biological_processpositive regulation of cell population proliferation
E0035821biological_processmodulation of process of another organism
E0038023molecular_functionsignaling receptor activity
E0042834molecular_functionpeptidoglycan binding
E0043434biological_processresponse to peptide hormone
E0044278biological_processdisruption of cell wall in another organism
E0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
E0062023cellular_componentcollagen-containing extracellular matrix
E0070492molecular_functionoligosaccharide binding
E0090729molecular_functiontoxin activity
G0005576cellular_componentextracellular region
G0005615cellular_componentextracellular space
G0008284biological_processpositive regulation of cell population proliferation
G0035821biological_processmodulation of process of another organism
G0038023molecular_functionsignaling receptor activity
G0042834molecular_functionpeptidoglycan binding
G0043434biological_processresponse to peptide hormone
G0044278biological_processdisruption of cell wall in another organism
G0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
G0062023cellular_componentcollagen-containing extracellular matrix
G0070492molecular_functionoligosaccharide binding
G0090729molecular_functiontoxin activity
H0005576cellular_componentextracellular region
H0005615cellular_componentextracellular space
H0008284biological_processpositive regulation of cell population proliferation
H0035821biological_processmodulation of process of another organism
H0038023molecular_functionsignaling receptor activity
H0042834molecular_functionpeptidoglycan binding
H0043434biological_processresponse to peptide hormone
H0044278biological_processdisruption of cell wall in another organism
H0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
H0062023cellular_componentcollagen-containing extracellular matrix
H0070492molecular_functionoligosaccharide binding
H0090729molecular_functiontoxin activity
J0005576cellular_componentextracellular region
J0005615cellular_componentextracellular space
J0008284biological_processpositive regulation of cell population proliferation
J0035821biological_processmodulation of process of another organism
J0038023molecular_functionsignaling receptor activity
J0042834molecular_functionpeptidoglycan binding
J0043434biological_processresponse to peptide hormone
J0044278biological_processdisruption of cell wall in another organism
J0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
J0062023cellular_componentcollagen-containing extracellular matrix
J0070492molecular_functionoligosaccharide binding
J0090729molecular_functiontoxin activity
K0005576cellular_componentextracellular region
K0005615cellular_componentextracellular space
K0008284biological_processpositive regulation of cell population proliferation
K0035821biological_processmodulation of process of another organism
K0038023molecular_functionsignaling receptor activity
K0042834molecular_functionpeptidoglycan binding
K0043434biological_processresponse to peptide hormone
K0044278biological_processdisruption of cell wall in another organism
K0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
K0062023cellular_componentcollagen-containing extracellular matrix
K0070492molecular_functionoligosaccharide binding
K0090729molecular_functiontoxin activity
M0005576cellular_componentextracellular region
M0005615cellular_componentextracellular space
M0008284biological_processpositive regulation of cell population proliferation
M0035821biological_processmodulation of process of another organism
M0038023molecular_functionsignaling receptor activity
M0042834molecular_functionpeptidoglycan binding
M0043434biological_processresponse to peptide hormone
M0044278biological_processdisruption of cell wall in another organism
M0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
M0062023cellular_componentcollagen-containing extracellular matrix
M0070492molecular_functionoligosaccharide binding
M0090729molecular_functiontoxin activity
N0005576cellular_componentextracellular region
N0005615cellular_componentextracellular space
N0008284biological_processpositive regulation of cell population proliferation
N0035821biological_processmodulation of process of another organism
N0038023molecular_functionsignaling receptor activity
N0042834molecular_functionpeptidoglycan binding
N0043434biological_processresponse to peptide hormone
N0044278biological_processdisruption of cell wall in another organism
N0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
N0062023cellular_componentcollagen-containing extracellular matrix
N0070492molecular_functionoligosaccharide binding
N0090729molecular_functiontoxin activity
P0005576cellular_componentextracellular region
P0005615cellular_componentextracellular space
P0008284biological_processpositive regulation of cell population proliferation
P0035821biological_processmodulation of process of another organism
P0038023molecular_functionsignaling receptor activity
P0042834molecular_functionpeptidoglycan binding
P0043434biological_processresponse to peptide hormone
P0044278biological_processdisruption of cell wall in another organism
P0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
P0062023cellular_componentcollagen-containing extracellular matrix
P0070492molecular_functionoligosaccharide binding
P0090729molecular_functiontoxin activity
Q0005576cellular_componentextracellular region
Q0005615cellular_componentextracellular space
Q0008284biological_processpositive regulation of cell population proliferation
Q0035821biological_processmodulation of process of another organism
Q0038023molecular_functionsignaling receptor activity
Q0042834molecular_functionpeptidoglycan binding
Q0043434biological_processresponse to peptide hormone
Q0044278biological_processdisruption of cell wall in another organism
Q0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
Q0062023cellular_componentcollagen-containing extracellular matrix
Q0070492molecular_functionoligosaccharide binding
Q0090729molecular_functiontoxin activity
Functional Information from PDB Data
site_idAC1
Number of Residues2
Detailsbinding site for residue NA A 201
ChainResidue
AGLU27
AHOH316

site_idAC2
Number of Residues4
Detailsbinding site for residue CL A 202
ChainResidue
AGLN55
AHOH310
ITYR258
IHOH514

site_idAC3
Number of Residues4
Detailsbinding site for residue GOL A 203
ChainResidue
IHIS287
ATYR11
ASER46
AHOH312

site_idAC4
Number of Residues1
Detailsbinding site for residue NA B 201
ChainResidue
BGLU18

site_idAC5
Number of Residues2
Detailsbinding site for residue NA C 401
ChainResidue
CASN303
OTHR337

site_idAC6
Number of Residues2
Detailsbinding site for residue NA C 402
ChainResidue
CGLU285
CASP321

site_idAC7
Number of Residues1
Detailsbinding site for residue NA C 403
ChainResidue
CHIS287

site_idAC8
Number of Residues6
Detailsbinding site for residue MG C 404
ChainResidue
CASP180
CSER182
CSER184
CTHR250
CASP283
CHOH503

site_idAC9
Number of Residues2
Detailsbinding site for residue CL C 405
ChainResidue
CSER334
CILE335

site_idAD1
Number of Residues2
Detailsbinding site for residue CL C 406
ChainResidue
CTRP188
CASP189

site_idAD2
Number of Residues2
Detailsbinding site for residue CL C 407
ChainResidue
CARG339
OPHE362

site_idAD3
Number of Residues1
Detailsbinding site for residue CL C 408
ChainResidue
CSER184

site_idAD4
Number of Residues5
Detailsbinding site for residue SO4 C 409
ChainResidue
BARG110
BLYS114
CSER184
CTYR314
CHOH503

site_idAD5
Number of Residues4
Detailsbinding site for residue NA C 411
ChainResidue
CASP297
CASN300
OASP297
OASN300

site_idAD6
Number of Residues2
Detailsbinding site for residue NA D 201
ChainResidue
DGLU27
JGLU34

site_idAD7
Number of Residues4
Detailsbinding site for residue NA D 202
ChainResidue
DPRO22
DLYS23
DGLU27
DHOH309

site_idAD8
Number of Residues3
Detailsbinding site for residue CL D 203
ChainResidue
DASN3
DGLN13
DHOH316

site_idAD9
Number of Residues1
Detailsbinding site for residue CL D 204
ChainResidue
DLYS23

site_idAE1
Number of Residues1
Detailsbinding site for residue CL D 205
ChainResidue
DLYS23

site_idAE2
Number of Residues1
Detailsbinding site for residue CL D 206
ChainResidue
DGLN122

site_idAE3
Number of Residues2
Detailsbinding site for residue CL D 207
ChainResidue
DASP51
DARG114

site_idAE4
Number of Residues3
Detailsbinding site for residue SO4 D 208
ChainResidue
DASN20
DGLU21
DHOH304

site_idAE5
Number of Residues5
Detailsbinding site for residue NA D 209
ChainResidue
DSER43
DGLY71
ETRP78
ESER79
EASP80

site_idAE6
Number of Residues3
Detailsbinding site for residue NA E 201
ChainResidue
ELEU3
EHIS4
EHOH309

site_idAE7
Number of Residues1
Detailsbinding site for residue NA E 202
ChainResidue
ESO4207

site_idAE8
Number of Residues1
Detailsbinding site for residue CL E 204
ChainResidue
EILE105

site_idAE9
Number of Residues3
Detailsbinding site for residue CL E 205
ChainResidue
ECYS1
ETRP5
EHOH308

site_idAF1
Number of Residues3
Detailsbinding site for residue CL E 206
ChainResidue
DTYR118
EASN69
EARG91

site_idAF2
Number of Residues3
Detailsbinding site for residue SO4 E 207
ChainResidue
EASN68
ELYS72
ENA202

site_idAF3
Number of Residues6
Detailsbinding site for residue SO4 F 401
ChainResidue
EARG110
ELYS114
FSER182
FSER184
FTHR250
FMG404

site_idAF4
Number of Residues1
Detailsbinding site for residue NA F 402
ChainResidue
FASN318

site_idAF5
Number of Residues1
Detailsbinding site for residue NA F 403
ChainResidue
FASP189

site_idAF6
Number of Residues4
Detailsbinding site for residue MG F 404
ChainResidue
FSER182
FSER184
FASP283
FSO4401

site_idAF7
Number of Residues1
Detailsbinding site for residue CL F 405
ChainResidue
FHOH510

site_idAF8
Number of Residues1
Detailsbinding site for residue SO4 F 406
ChainResidue
FASN343

site_idAF9
Number of Residues2
Detailsbinding site for residue NA G 201
ChainResidue
GASP47
GHOH315

site_idAG1
Number of Residues1
Detailsbinding site for residue CL G 202
ChainResidue
GASN125

site_idAG2
Number of Residues5
Detailsbinding site for residue GOL G 204
ChainResidue
CARG221
CVAL222
CTYR258
GGLN55
GASN59

site_idAG3
Number of Residues1
Detailsbinding site for residue GOL G 205
ChainResidue
GTYR67

site_idAG4
Number of Residues2
Detailsbinding site for residue NA H 201
ChainResidue
HTYR86
HHOH307

site_idAG5
Number of Residues1
Detailsbinding site for residue CL H 202
ChainResidue
HLYS75

site_idAG6
Number of Residues1
Detailsbinding site for residue CL H 203
ChainResidue
HLYS59

site_idAG7
Number of Residues5
Detailsbinding site for residue GOL H 204
ChainResidue
GTRP25
HGLU77
HTRP78
HSER79
HASP81

site_idAG8
Number of Residues3
Detailsbinding site for residue NA I 401
ChainResidue
HLEU90
IASN218
IASP248

site_idAG9
Number of Residues5
Detailsbinding site for residue NA I 402
ChainResidue
IGLY284
IGLU285
ISER286
IGLU328
IHOH503

site_idAH1
Number of Residues6
Detailsbinding site for residue MG I 403
ChainResidue
IASP180
ISER182
ISER184
ITHR250
IASP283
ISO4407

site_idAH2
Number of Residues2
Detailsbinding site for residue CL I 404
ChainResidue
ILEU305
IILE335

site_idAH3
Number of Residues1
Detailsbinding site for residue CL I 405
ChainResidue
IGLU347

site_idAH4
Number of Residues1
Detailsbinding site for residue CL I 406
ChainResidue
IGLN244

site_idAH5
Number of Residues5
Detailsbinding site for residue SO4 I 407
ChainResidue
ISER182
ISER184
ITHR250
ITYR314
IMG403

site_idAH6
Number of Residues2
Detailsbinding site for residue NA J 201
ChainResidue
JASP12
JHIS14

site_idAH7
Number of Residues1
Detailsbinding site for residue NA J 202
ChainResidue
JASP47

site_idAH8
Number of Residues1
Detailsbinding site for residue CL J 203
ChainResidue
JARG114

site_idAH9
Number of Residues9
Detailsbinding site for residue GOL J 204
ChainResidue
JILE44
JALA50
JVAL53
JALA54
JLEU107
JPHE113
JARG114
JTRP116
KTYR86

site_idAI1
Number of Residues3
Detailsbinding site for residue GOL J 205
ChainResidue
JTHR33
JGLU34
JALA36

site_idAI2
Number of Residues1
Detailsbinding site for residue NA L 401
ChainResidue
LHIS287

site_idAI3
Number of Residues3
Detailsbinding site for residue NA L 402
ChainResidue
LSER286
LGLU328
LHOH510

site_idAI4
Number of Residues4
Detailsbinding site for residue MG L 403
ChainResidue
LSER184
LASP283
LGLY284
LSO4406

site_idAI5
Number of Residues1
Detailsbinding site for residue CL L 405
ChainResidue
LASN318

site_idAI6
Number of Residues6
Detailsbinding site for residue SO4 L 406
ChainResidue
KARG92
LSER182
LASP248
LTHR250
LMG403
LHOH502

site_idAI7
Number of Residues1
Detailsbinding site for residue NA M 201
ChainResidue
MGLU27

site_idAI8
Number of Residues2
Detailsbinding site for residue CL M 202
ChainResidue
MGLN17
MALA18

site_idAI9
Number of Residues1
Detailsbinding site for residue CL M 203
ChainResidue
MPHE2

site_idAJ1
Number of Residues2
Detailsbinding site for residue NA N 201
ChainResidue
NSER43
NGLU45

site_idAJ2
Number of Residues1
Detailsbinding site for residue CL N 202
ChainResidue
NARG44

site_idAJ3
Number of Residues6
Detailsbinding site for residue CL N 203
ChainResidue
NARG92
NGLU113
NLYS114
OLEU249
OHIS287
ONA401

site_idAJ4
Number of Residues4
Detailsbinding site for residue NA O 401
ChainResidue
NARG92
NCL203
OASP248
OSO4402

site_idAJ5
Number of Residues5
Detailsbinding site for residue SO4 O 402
ChainResidue
NARG110
NLYS114
OTYR314
ONA401
OMG405

site_idAJ6
Number of Residues4
Detailsbinding site for residue NA O 403
ChainResidue
NLEU90
OASP248
OHOH518
OHOH520

site_idAJ7
Number of Residues4
Detailsbinding site for residue NA O 404
ChainResidue
OPRO187
OTRP188
OASP189
OHOH519

site_idAJ8
Number of Residues4
Detailsbinding site for residue MG O 405
ChainResidue
OASP180
OSER182
OSER184
OSO4402

site_idAJ9
Number of Residues3
Detailsbinding site for residue CL O 406
ChainResidue
OARG221
OVAL222
RASN227

site_idAK1
Number of Residues2
Detailsbinding site for residue SO4 O 407
ChainResidue
OARG260
OLYS261

site_idAK2
Number of Residues2
Detailsbinding site for residue NA P 201
ChainResidue
PPRO22
PGLU65

site_idAK3
Number of Residues1
Detailsbinding site for residue CL P 202
ChainResidue
PASN59

site_idAK4
Number of Residues2
Detailsbinding site for residue CL P 203
ChainResidue
PASN95
PTRP96

site_idAK5
Number of Residues3
Detailsbinding site for residue GOL P 204
ChainResidue
PGLU100
PGLN102
PHOH305

site_idAK6
Number of Residues2
Detailsbinding site for residue NA Q 201
ChainResidue
QTYR60
RTHR322

site_idAK7
Number of Residues1
Detailsbinding site for residue NA Q 202
ChainResidue
QGLU46

site_idAK8
Number of Residues1
Detailsbinding site for residue CL Q 203
ChainResidue
QARG44

site_idAK9
Number of Residues1
Detailsbinding site for residue CL Q 204
ChainResidue
QLYS75

site_idAL1
Number of Residues1
Detailsbinding site for residue NA R 401
ChainResidue
RGLU196

site_idAL2
Number of Residues7
Detailsbinding site for residue MG R 402
ChainResidue
RASP180
RSER182
RSER184
RTHR250
RASP283
RGLY284
RSO4404

site_idAL3
Number of Residues2
Detailsbinding site for residue CL R 403
ChainResidue
RLYS192
RTHR242

site_idAL4
Number of Residues7
Detailsbinding site for residue SO4 R 404
ChainResidue
RSER182
RSER184
RLEU249
RTHR250
RMG402
RHOH506
RHOH507

Functional Information from PROSITE/UniProt
site_idPS00615
Number of Residues26
DetailsC_TYPE_LECTIN_1 C-type lectin domain signature. CAvmvvktdrif..WFNRGCektvs.FVC
ChainResidueDetails
BCYS95-CYS120

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973
ChainResidueDetails
CASN343
FASN343
IASN343
LASN343
OASN343
RASN343

221051

PDB entries from 2024-06-12

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