5THP
Rhodocetin in complex with the integrin alpha2-A domain
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005576 | cellular_component | extracellular region |
| A | 0035821 | biological_process | modulation of process of another organism |
| A | 0090729 | molecular_function | toxin activity |
| B | 0005576 | cellular_component | extracellular region |
| B | 0035821 | biological_process | modulation of process of another organism |
| B | 0090729 | molecular_function | toxin activity |
| D | 0005576 | cellular_component | extracellular region |
| D | 0035821 | biological_process | modulation of process of another organism |
| D | 0090729 | molecular_function | toxin activity |
| E | 0005576 | cellular_component | extracellular region |
| E | 0035821 | biological_process | modulation of process of another organism |
| E | 0090729 | molecular_function | toxin activity |
| G | 0005576 | cellular_component | extracellular region |
| G | 0035821 | biological_process | modulation of process of another organism |
| G | 0090729 | molecular_function | toxin activity |
| H | 0005576 | cellular_component | extracellular region |
| H | 0035821 | biological_process | modulation of process of another organism |
| H | 0090729 | molecular_function | toxin activity |
| J | 0005576 | cellular_component | extracellular region |
| J | 0035821 | biological_process | modulation of process of another organism |
| J | 0090729 | molecular_function | toxin activity |
| K | 0005576 | cellular_component | extracellular region |
| K | 0035821 | biological_process | modulation of process of another organism |
| K | 0090729 | molecular_function | toxin activity |
| M | 0005576 | cellular_component | extracellular region |
| M | 0035821 | biological_process | modulation of process of another organism |
| M | 0090729 | molecular_function | toxin activity |
| N | 0005576 | cellular_component | extracellular region |
| N | 0035821 | biological_process | modulation of process of another organism |
| N | 0090729 | molecular_function | toxin activity |
| P | 0005576 | cellular_component | extracellular region |
| P | 0035821 | biological_process | modulation of process of another organism |
| P | 0090729 | molecular_function | toxin activity |
| Q | 0005576 | cellular_component | extracellular region |
| Q | 0035821 | biological_process | modulation of process of another organism |
| Q | 0090729 | molecular_function | toxin activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 2 |
| Details | binding site for residue NA A 201 |
| Chain | Residue |
| A | GLU27 |
| A | HOH316 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue CL A 202 |
| Chain | Residue |
| A | GLN55 |
| A | HOH310 |
| I | TYR258 |
| I | HOH514 |
| site_id | AC3 |
| Number of Residues | 4 |
| Details | binding site for residue GOL A 203 |
| Chain | Residue |
| I | HIS287 |
| A | TYR11 |
| A | SER46 |
| A | HOH312 |
| site_id | AC4 |
| Number of Residues | 1 |
| Details | binding site for residue NA B 201 |
| Chain | Residue |
| B | GLU18 |
| site_id | AC5 |
| Number of Residues | 2 |
| Details | binding site for residue NA C 401 |
| Chain | Residue |
| C | ASN303 |
| O | THR337 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue NA C 402 |
| Chain | Residue |
| C | GLU285 |
| C | ASP321 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue NA C 403 |
| Chain | Residue |
| C | HIS287 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue MG C 404 |
| Chain | Residue |
| C | ASP180 |
| C | SER182 |
| C | SER184 |
| C | THR250 |
| C | ASP283 |
| C | HOH503 |
| site_id | AC9 |
| Number of Residues | 2 |
| Details | binding site for residue CL C 405 |
| Chain | Residue |
| C | SER334 |
| C | ILE335 |
| site_id | AD1 |
| Number of Residues | 2 |
| Details | binding site for residue CL C 406 |
| Chain | Residue |
| C | TRP188 |
| C | ASP189 |
| site_id | AD2 |
| Number of Residues | 2 |
| Details | binding site for residue CL C 407 |
| Chain | Residue |
| C | ARG339 |
| O | PHE362 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue CL C 408 |
| Chain | Residue |
| C | SER184 |
| site_id | AD4 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 C 409 |
| Chain | Residue |
| B | ARG110 |
| B | LYS114 |
| C | SER184 |
| C | TYR314 |
| C | HOH503 |
| site_id | AD5 |
| Number of Residues | 4 |
| Details | binding site for residue NA C 411 |
| Chain | Residue |
| C | ASP297 |
| C | ASN300 |
| O | ASP297 |
| O | ASN300 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue NA D 201 |
| Chain | Residue |
| D | GLU27 |
| J | GLU34 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue NA D 202 |
| Chain | Residue |
| D | PRO22 |
| D | LYS23 |
| D | GLU27 |
| D | HOH309 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue CL D 203 |
| Chain | Residue |
| D | ASN3 |
| D | GLN13 |
| D | HOH316 |
| site_id | AD9 |
| Number of Residues | 1 |
| Details | binding site for residue CL D 204 |
| Chain | Residue |
| D | LYS23 |
| site_id | AE1 |
| Number of Residues | 1 |
| Details | binding site for residue CL D 205 |
| Chain | Residue |
| D | LYS23 |
| site_id | AE2 |
| Number of Residues | 1 |
| Details | binding site for residue CL D 206 |
| Chain | Residue |
| D | GLN122 |
| site_id | AE3 |
| Number of Residues | 2 |
| Details | binding site for residue CL D 207 |
| Chain | Residue |
| D | ASP51 |
| D | ARG114 |
| site_id | AE4 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 D 208 |
| Chain | Residue |
| D | ASN20 |
| D | GLU21 |
| D | HOH304 |
| site_id | AE5 |
| Number of Residues | 5 |
| Details | binding site for residue NA D 209 |
| Chain | Residue |
| D | SER43 |
| D | GLY71 |
| E | TRP78 |
| E | SER79 |
| E | ASP80 |
| site_id | AE6 |
| Number of Residues | 3 |
| Details | binding site for residue NA E 201 |
| Chain | Residue |
| E | LEU3 |
| E | HIS4 |
| E | HOH309 |
| site_id | AE7 |
| Number of Residues | 1 |
| Details | binding site for residue NA E 202 |
| Chain | Residue |
| E | SO4207 |
| site_id | AE8 |
| Number of Residues | 1 |
| Details | binding site for residue CL E 204 |
| Chain | Residue |
| E | ILE105 |
| site_id | AE9 |
| Number of Residues | 3 |
| Details | binding site for residue CL E 205 |
| Chain | Residue |
| E | CYS1 |
| E | TRP5 |
| E | HOH308 |
| site_id | AF1 |
| Number of Residues | 3 |
| Details | binding site for residue CL E 206 |
| Chain | Residue |
| D | TYR118 |
| E | ASN69 |
| E | ARG91 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 E 207 |
| Chain | Residue |
| E | ASN68 |
| E | LYS72 |
| E | NA202 |
| site_id | AF3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 F 401 |
| Chain | Residue |
| E | ARG110 |
| E | LYS114 |
| F | SER182 |
| F | SER184 |
| F | THR250 |
| F | MG404 |
| site_id | AF4 |
| Number of Residues | 1 |
| Details | binding site for residue NA F 402 |
| Chain | Residue |
| F | ASN318 |
| site_id | AF5 |
| Number of Residues | 1 |
| Details | binding site for residue NA F 403 |
| Chain | Residue |
| F | ASP189 |
| site_id | AF6 |
| Number of Residues | 4 |
| Details | binding site for residue MG F 404 |
| Chain | Residue |
| F | SER182 |
| F | SER184 |
| F | ASP283 |
| F | SO4401 |
| site_id | AF7 |
| Number of Residues | 1 |
| Details | binding site for residue CL F 405 |
| Chain | Residue |
| F | HOH510 |
| site_id | AF8 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 F 406 |
| Chain | Residue |
| F | ASN343 |
| site_id | AF9 |
| Number of Residues | 2 |
| Details | binding site for residue NA G 201 |
| Chain | Residue |
| G | ASP47 |
| G | HOH315 |
| site_id | AG1 |
| Number of Residues | 1 |
| Details | binding site for residue CL G 202 |
| Chain | Residue |
| G | ASN125 |
| site_id | AG2 |
| Number of Residues | 5 |
| Details | binding site for residue GOL G 204 |
| Chain | Residue |
| C | ARG221 |
| C | VAL222 |
| C | TYR258 |
| G | GLN55 |
| G | ASN59 |
| site_id | AG3 |
| Number of Residues | 1 |
| Details | binding site for residue GOL G 205 |
| Chain | Residue |
| G | TYR67 |
| site_id | AG4 |
| Number of Residues | 2 |
| Details | binding site for residue NA H 201 |
| Chain | Residue |
| H | TYR86 |
| H | HOH307 |
| site_id | AG5 |
| Number of Residues | 1 |
| Details | binding site for residue CL H 202 |
| Chain | Residue |
| H | LYS75 |
| site_id | AG6 |
| Number of Residues | 1 |
| Details | binding site for residue CL H 203 |
| Chain | Residue |
| H | LYS59 |
| site_id | AG7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL H 204 |
| Chain | Residue |
| G | TRP25 |
| H | GLU77 |
| H | TRP78 |
| H | SER79 |
| H | ASP81 |
| site_id | AG8 |
| Number of Residues | 3 |
| Details | binding site for residue NA I 401 |
| Chain | Residue |
| H | LEU90 |
| I | ASN218 |
| I | ASP248 |
| site_id | AG9 |
| Number of Residues | 5 |
| Details | binding site for residue NA I 402 |
| Chain | Residue |
| I | GLY284 |
| I | GLU285 |
| I | SER286 |
| I | GLU328 |
| I | HOH503 |
| site_id | AH1 |
| Number of Residues | 6 |
| Details | binding site for residue MG I 403 |
| Chain | Residue |
| I | ASP180 |
| I | SER182 |
| I | SER184 |
| I | THR250 |
| I | ASP283 |
| I | SO4407 |
| site_id | AH2 |
| Number of Residues | 2 |
| Details | binding site for residue CL I 404 |
| Chain | Residue |
| I | LEU305 |
| I | ILE335 |
| site_id | AH3 |
| Number of Residues | 1 |
| Details | binding site for residue CL I 405 |
| Chain | Residue |
| I | GLU347 |
| site_id | AH4 |
| Number of Residues | 1 |
| Details | binding site for residue CL I 406 |
| Chain | Residue |
| I | GLN244 |
| site_id | AH5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 I 407 |
| Chain | Residue |
| I | SER182 |
| I | SER184 |
| I | THR250 |
| I | TYR314 |
| I | MG403 |
| site_id | AH6 |
| Number of Residues | 2 |
| Details | binding site for residue NA J 201 |
| Chain | Residue |
| J | ASP12 |
| J | HIS14 |
| site_id | AH7 |
| Number of Residues | 1 |
| Details | binding site for residue NA J 202 |
| Chain | Residue |
| J | ASP47 |
| site_id | AH8 |
| Number of Residues | 1 |
| Details | binding site for residue CL J 203 |
| Chain | Residue |
| J | ARG114 |
| site_id | AH9 |
| Number of Residues | 9 |
| Details | binding site for residue GOL J 204 |
| Chain | Residue |
| J | ILE44 |
| J | ALA50 |
| J | VAL53 |
| J | ALA54 |
| J | LEU107 |
| J | PHE113 |
| J | ARG114 |
| J | TRP116 |
| K | TYR86 |
| site_id | AI1 |
| Number of Residues | 3 |
| Details | binding site for residue GOL J 205 |
| Chain | Residue |
| J | THR33 |
| J | GLU34 |
| J | ALA36 |
| site_id | AI2 |
| Number of Residues | 1 |
| Details | binding site for residue NA L 401 |
| Chain | Residue |
| L | HIS287 |
| site_id | AI3 |
| Number of Residues | 3 |
| Details | binding site for residue NA L 402 |
| Chain | Residue |
| L | SER286 |
| L | GLU328 |
| L | HOH510 |
| site_id | AI4 |
| Number of Residues | 4 |
| Details | binding site for residue MG L 403 |
| Chain | Residue |
| L | SER184 |
| L | ASP283 |
| L | GLY284 |
| L | SO4406 |
| site_id | AI5 |
| Number of Residues | 1 |
| Details | binding site for residue CL L 405 |
| Chain | Residue |
| L | ASN318 |
| site_id | AI6 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 L 406 |
| Chain | Residue |
| K | ARG92 |
| L | SER182 |
| L | ASP248 |
| L | THR250 |
| L | MG403 |
| L | HOH502 |
| site_id | AI7 |
| Number of Residues | 1 |
| Details | binding site for residue NA M 201 |
| Chain | Residue |
| M | GLU27 |
| site_id | AI8 |
| Number of Residues | 2 |
| Details | binding site for residue CL M 202 |
| Chain | Residue |
| M | GLN17 |
| M | ALA18 |
| site_id | AI9 |
| Number of Residues | 1 |
| Details | binding site for residue CL M 203 |
| Chain | Residue |
| M | PHE2 |
| site_id | AJ1 |
| Number of Residues | 2 |
| Details | binding site for residue NA N 201 |
| Chain | Residue |
| N | SER43 |
| N | GLU45 |
| site_id | AJ2 |
| Number of Residues | 1 |
| Details | binding site for residue CL N 202 |
| Chain | Residue |
| N | ARG44 |
| site_id | AJ3 |
| Number of Residues | 6 |
| Details | binding site for residue CL N 203 |
| Chain | Residue |
| N | ARG92 |
| N | GLU113 |
| N | LYS114 |
| O | LEU249 |
| O | HIS287 |
| O | NA401 |
| site_id | AJ4 |
| Number of Residues | 4 |
| Details | binding site for residue NA O 401 |
| Chain | Residue |
| N | ARG92 |
| N | CL203 |
| O | ASP248 |
| O | SO4402 |
| site_id | AJ5 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 O 402 |
| Chain | Residue |
| N | ARG110 |
| N | LYS114 |
| O | TYR314 |
| O | NA401 |
| O | MG405 |
| site_id | AJ6 |
| Number of Residues | 4 |
| Details | binding site for residue NA O 403 |
| Chain | Residue |
| N | LEU90 |
| O | ASP248 |
| O | HOH518 |
| O | HOH520 |
| site_id | AJ7 |
| Number of Residues | 4 |
| Details | binding site for residue NA O 404 |
| Chain | Residue |
| O | PRO187 |
| O | TRP188 |
| O | ASP189 |
| O | HOH519 |
| site_id | AJ8 |
| Number of Residues | 4 |
| Details | binding site for residue MG O 405 |
| Chain | Residue |
| O | ASP180 |
| O | SER182 |
| O | SER184 |
| O | SO4402 |
| site_id | AJ9 |
| Number of Residues | 3 |
| Details | binding site for residue CL O 406 |
| Chain | Residue |
| O | ARG221 |
| O | VAL222 |
| R | ASN227 |
| site_id | AK1 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 O 407 |
| Chain | Residue |
| O | ARG260 |
| O | LYS261 |
| site_id | AK2 |
| Number of Residues | 2 |
| Details | binding site for residue NA P 201 |
| Chain | Residue |
| P | PRO22 |
| P | GLU65 |
| site_id | AK3 |
| Number of Residues | 1 |
| Details | binding site for residue CL P 202 |
| Chain | Residue |
| P | ASN59 |
| site_id | AK4 |
| Number of Residues | 2 |
| Details | binding site for residue CL P 203 |
| Chain | Residue |
| P | ASN95 |
| P | TRP96 |
| site_id | AK5 |
| Number of Residues | 3 |
| Details | binding site for residue GOL P 204 |
| Chain | Residue |
| P | GLU100 |
| P | GLN102 |
| P | HOH305 |
| site_id | AK6 |
| Number of Residues | 2 |
| Details | binding site for residue NA Q 201 |
| Chain | Residue |
| Q | TYR60 |
| R | THR322 |
| site_id | AK7 |
| Number of Residues | 1 |
| Details | binding site for residue NA Q 202 |
| Chain | Residue |
| Q | GLU46 |
| site_id | AK8 |
| Number of Residues | 1 |
| Details | binding site for residue CL Q 203 |
| Chain | Residue |
| Q | ARG44 |
| site_id | AK9 |
| Number of Residues | 1 |
| Details | binding site for residue CL Q 204 |
| Chain | Residue |
| Q | LYS75 |
| site_id | AL1 |
| Number of Residues | 1 |
| Details | binding site for residue NA R 401 |
| Chain | Residue |
| R | GLU196 |
| site_id | AL2 |
| Number of Residues | 7 |
| Details | binding site for residue MG R 402 |
| Chain | Residue |
| R | ASP180 |
| R | SER182 |
| R | SER184 |
| R | THR250 |
| R | ASP283 |
| R | GLY284 |
| R | SO4404 |
| site_id | AL3 |
| Number of Residues | 2 |
| Details | binding site for residue CL R 403 |
| Chain | Residue |
| R | LYS192 |
| R | THR242 |
| site_id | AL4 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 R 404 |
| Chain | Residue |
| R | SER182 |
| R | SER184 |
| R | LEU249 |
| R | THR250 |
| R | MG402 |
| R | HOH506 |
| R | HOH507 |
Functional Information from PROSITE/UniProt
| site_id | PS00615 |
| Number of Residues | 26 |
| Details | C_TYPE_LECTIN_1 C-type lectin domain signature. CAvmvvktdrif..WFNRGCektvs.FVC |
| Chain | Residue | Details |
| B | CYS95-CYS120 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 6 |
| Details | CARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000269|PubMed:16263699, ECO:0000269|PubMed:19159218, ECO:0000269|PubMed:19349973 |
| Chain | Residue | Details |
| C | ASN343 | |
| F | ASN343 | |
| I | ASN343 | |
| L | ASN343 | |
| O | ASN343 | |
| R | ASN343 |
