5TD3
Crystal structure of Catechol 1,2-dioxygenase from Burkholderia vietnamiensis
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0005506 | molecular_function | iron ion binding |
A | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
A | 0008199 | molecular_function | ferric iron binding |
A | 0009712 | biological_process | catechol-containing compound metabolic process |
A | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
A | 0018576 | molecular_function | catechol 1,2-dioxygenase activity |
A | 0019614 | biological_process | catechol-containing compound catabolic process |
A | 0042952 | biological_process | beta-ketoadipate pathway |
A | 0046872 | molecular_function | metal ion binding |
A | 0051213 | molecular_function | dioxygenase activity |
B | 0003824 | molecular_function | catalytic activity |
B | 0005506 | molecular_function | iron ion binding |
B | 0006725 | biological_process | obsolete cellular aromatic compound metabolic process |
B | 0008199 | molecular_function | ferric iron binding |
B | 0009712 | biological_process | catechol-containing compound metabolic process |
B | 0016702 | molecular_function | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
B | 0018576 | molecular_function | catechol 1,2-dioxygenase activity |
B | 0019614 | biological_process | catechol-containing compound catabolic process |
B | 0042952 | biological_process | beta-ketoadipate pathway |
B | 0046872 | molecular_function | metal ion binding |
B | 0051213 | molecular_function | dioxygenase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 3 |
Details | binding site for residue ZN A 401 |
Chain | Residue |
A | TYR175 |
A | HIS235 |
A | HIS237 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue MG A 402 |
Chain | Residue |
A | HOH706 |
A | HOH785 |
A | HOH862 |
B | HOH576 |
B | HOH746 |
B | HOH787 |
site_id | AC3 |
Number of Residues | 1 |
Details | binding site for residue EDO A 403 |
Chain | Residue |
A | HOH593 |
site_id | AC4 |
Number of Residues | 5 |
Details | binding site for residue CL A 404 |
Chain | Residue |
A | ARG128 |
B | ARG128 |
B | LYS133 |
B | HOH521 |
B | HOH704 |
site_id | AC5 |
Number of Residues | 23 |
Details | binding site for residue PTY A 405 |
Chain | Residue |
A | GLU65 |
A | ALA68 |
A | VAL70 |
A | TYR72 |
A | LEU76 |
A | ALA82 |
A | LEU85 |
A | ALA86 |
A | LEU91 |
A | GLN221 |
A | LEU222 |
A | ARG225 |
A | HOH547 |
A | HOH559 |
B | THR41 |
B | ILE44 |
B | LEU48 |
B | LEU49 |
B | LEU73 |
B | LEU91 |
B | PRO316 |
B | PTY401 |
B | HOH524 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue EDO A 406 |
Chain | Residue |
A | THR241 |
A | SER242 |
A | HIS245 |
A | ARG246 |
A | LYS247 |
A | ARG304 |
A | ASP309 |
A | HOH639 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue CL A 407 |
Chain | Residue |
A | PRO215 |
A | GLN216 |
A | HOH798 |
B | HOH669 |
site_id | AC8 |
Number of Residues | 14 |
Details | binding site for residue PTY B 401 |
Chain | Residue |
A | THR41 |
A | LEU48 |
A | LEU49 |
A | ASP51 |
A | LEU52 |
A | PTY405 |
B | LEU48 |
B | ASP51 |
B | GLU65 |
B | LEU73 |
B | GLN221 |
B | ARG225 |
B | HOH583 |
B | HOH602 |
site_id | AC9 |
Number of Residues | 3 |
Details | binding site for residue ZN B 402 |
Chain | Residue |
B | TYR175 |
B | HIS235 |
B | HIS237 |
Functional Information from PROSITE/UniProt
site_id | PS00083 |
Number of Residues | 29 |
Details | INTRADIOL_DIOXYGENAS Intradiol ring-cleavage dioxygenases signature. IhGtVkdldGkpVagalVECwhanshGfY |
Chain | Residue | Details |
A | ILE147-TYR175 |