5T7H
Crystal structure of dimeric yeast iso-1-cytochrome C with CYMAL6
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005758 | cellular_component | mitochondrial intermembrane space |
| A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0020037 | molecular_function | heme binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 1901612 | molecular_function | cardiolipin binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005739 | cellular_component | mitochondrion |
| B | 0005758 | cellular_component | mitochondrial intermembrane space |
| B | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| B | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| B | 0009055 | molecular_function | electron transfer activity |
| B | 0020037 | molecular_function | heme binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 1901612 | molecular_function | cardiolipin binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0005758 | cellular_component | mitochondrial intermembrane space |
| C | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| C | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| C | 0009055 | molecular_function | electron transfer activity |
| C | 0020037 | molecular_function | heme binding |
| C | 0046872 | molecular_function | metal ion binding |
| C | 1901612 | molecular_function | cardiolipin binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005739 | cellular_component | mitochondrion |
| D | 0005758 | cellular_component | mitochondrial intermembrane space |
| D | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| D | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| D | 0009055 | molecular_function | electron transfer activity |
| D | 0020037 | molecular_function | heme binding |
| D | 0046872 | molecular_function | metal ion binding |
| D | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 A 201 |
| Chain | Residue |
| A | SER47 |
| C | HOH315 |
| A | TYR48 |
| A | ASN52 |
| A | HOH309 |
| A | HOH314 |
| A | HOH340 |
| C | SER2 |
| C | ALA3 |
| C | LYS4 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 202 |
| Chain | Residue |
| A | PRO76 |
| A | GLY77 |
| A | THR78 |
| A | LYS79 |
| A | MET80 |
| site_id | AC3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 203 |
| Chain | Residue |
| A | LYS86 |
| A | LYS87 |
| A | GLU88 |
| site_id | AC4 |
| Number of Residues | 2 |
| Details | binding site for residue ZE7 A 204 |
| Chain | Residue |
| A | LYS55 |
| A | TYR74 |
| site_id | AC5 |
| Number of Residues | 9 |
| Details | binding site for residue SO4 B 201 |
| Chain | Residue |
| B | SER2 |
| B | ALA3 |
| B | LYS4 |
| B | HOH326 |
| D | SER47 |
| D | TYR48 |
| D | ASN52 |
| D | HOH313 |
| D | HOH317 |
| site_id | AC6 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 B 202 |
| Chain | Residue |
| B | SER47 |
| B | TYR48 |
| B | ASN52 |
| B | HOH310 |
| B | HOH328 |
| B | HOH341 |
| D | SER2 |
| D | ALA3 |
| D | LYS4 |
| D | HOH331 |
| site_id | AC7 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 B 203 |
| Chain | Residue |
| B | PRO76 |
| B | GLY77 |
| B | THR78 |
| B | LYS79 |
| B | MET80 |
| B | LYS86 |
| B | HOH346 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue ZE7 B 204 |
| Chain | Residue |
| B | TYR67 |
| B | TYR74 |
| site_id | AC9 |
| Number of Residues | 10 |
| Details | binding site for residue SO4 C 201 |
| Chain | Residue |
| A | SER2 |
| A | ALA3 |
| A | LYS4 |
| C | SER47 |
| C | TYR48 |
| C | ASN52 |
| C | HOH306 |
| C | HOH318 |
| C | HOH333 |
| C | HOH339 |
| site_id | AD1 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 C 202 |
| Chain | Residue |
| C | PRO76 |
| C | GLY77 |
| C | THR78 |
| C | LYS79 |
| C | MET80 |
| C | HOH309 |
| C | HOH320 |
| site_id | AD2 |
| Number of Residues | 7 |
| Details | binding site for residue ZE7 C 203 |
| Chain | Residue |
| C | SER40 |
| C | TYR48 |
| C | LYS55 |
| C | TRP59 |
| C | ASN63 |
| C | TYR67 |
| C | TYR74 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 D 201 |
| Chain | Residue |
| D | GLY77 |
| D | THR78 |
| D | LYS79 |
| D | MET80 |
| D | HOH302 |
| D | HOH342 |
| site_id | AD4 |
| Number of Residues | 3 |
| Details | binding site for residue ZE7 D 202 |
| Chain | Residue |
| D | TRP59 |
| D | TYR67 |
| D | TYR74 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 8 |
| Details | BINDING: covalent => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
| Chain | Residue | Details |
| A | CYS14 | |
| A | CYS17 | |
| B | CYS14 | |
| B | CYS17 | |
| C | CYS14 | |
| C | CYS17 | |
| D | CYS14 | |
| D | CYS17 |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | BINDING: axial binding residue => ECO:0000269|PubMed:11880631, ECO:0000269|PubMed:18390544, ECO:0007744|PDB:1KYO, ECO:0007744|PDB:3CX5 |
| Chain | Residue | Details |
| A | HIS18 | |
| A | MET80 | |
| B | HIS18 | |
| B | MET80 | |
| C | HIS18 | |
| C | MET80 | |
| D | HIS18 | |
| D | MET80 |
| site_id | SWS_FT_FI3 |
| Number of Residues | 4 |
| Details | MOD_RES: N6,N6,N6-trimethyllysine; by CTM1 => ECO:0000269|PubMed:10791961, ECO:0000269|PubMed:11880631, ECO:0007744|PDB:1KYO |
| Chain | Residue | Details |
| A | ALA72 | |
| B | ALA72 | |
| C | ALA72 | |
| D | ALA72 |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | MOD_RES: N6,N6,N6-trimethyllysine => ECO:0000269|PubMed:10821864, ECO:0000269|PubMed:18390544 |
| Chain | Residue | Details |
| A | LYS73 | |
| B | LYS73 | |
| C | LYS73 | |
| D | LYS73 |
