5T7H

Crystal structure of dimeric yeast iso-1-cytochrome C with CYMAL6

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005515	molecular_function	protein binding
A	0005739	cellular_component	mitochondrion
A	0005758	cellular_component	mitochondrial intermembrane space
A	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
A	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
A	0009055	molecular_function	electron transfer activity
A	0020037	molecular_function	heme binding
A	0022904	biological_process	respiratory electron transport chain
A	0046872	molecular_function	metal ion binding
A	1901612	molecular_function	cardiolipin binding
B	0005515	molecular_function	protein binding
B	0005739	cellular_component	mitochondrion
B	0005758	cellular_component	mitochondrial intermembrane space
B	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
B	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
B	0009055	molecular_function	electron transfer activity
B	0020037	molecular_function	heme binding
B	0022904	biological_process	respiratory electron transport chain
B	0046872	molecular_function	metal ion binding
B	1901612	molecular_function	cardiolipin binding
C	0005515	molecular_function	protein binding
C	0005739	cellular_component	mitochondrion
C	0005758	cellular_component	mitochondrial intermembrane space
C	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
C	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
C	0009055	molecular_function	electron transfer activity
C	0020037	molecular_function	heme binding
C	0022904	biological_process	respiratory electron transport chain
C	0046872	molecular_function	metal ion binding
C	1901612	molecular_function	cardiolipin binding
D	0005515	molecular_function	protein binding
D	0005739	cellular_component	mitochondrion
D	0005758	cellular_component	mitochondrial intermembrane space
D	0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
D	0006123	biological_process	mitochondrial electron transport, cytochrome c to oxygen
D	0009055	molecular_function	electron transfer activity
D	0020037	molecular_function	heme binding
D	0022904	biological_process	respiratory electron transport chain
D	0046872	molecular_function	metal ion binding
D	1901612	molecular_function	cardiolipin binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	10
Details	binding site for residue SO4 A 201

Chain	Residue
A	SER47
C	HOH315
A	TYR48
A	ASN52
A	HOH309
A	HOH314
A	HOH340
C	SER2
C	ALA3
C	LYS4

---

site_id	AC2
Number of Residues	5
Details	binding site for residue SO4 A 202

Chain	Residue
A	PRO76
A	GLY77
A	THR78
A	LYS79
A	MET80

---

site_id	AC3
Number of Residues	3
Details	binding site for residue SO4 A 203

Chain	Residue
A	LYS86
A	LYS87
A	GLU88

---

site_id	AC4
Number of Residues	2
Details	binding site for residue ZE7 A 204

Chain	Residue
A	LYS55
A	TYR74

---

site_id	AC5
Number of Residues	9
Details	binding site for residue SO4 B 201

Chain	Residue
B	SER2
B	ALA3
B	LYS4
B	HOH326
D	SER47
D	TYR48
D	ASN52
D	HOH313
D	HOH317

---

site_id	AC6
Number of Residues	10
Details	binding site for residue SO4 B 202

Chain	Residue
B	SER47
B	TYR48
B	ASN52
B	HOH310
B	HOH328
B	HOH341
D	SER2
D	ALA3
D	LYS4
D	HOH331

---

site_id	AC7
Number of Residues	7
Details	binding site for residue SO4 B 203

Chain	Residue
B	PRO76
B	GLY77
B	THR78
B	LYS79
B	MET80
B	LYS86
B	HOH346

---

site_id	AC8
Number of Residues	2
Details	binding site for residue ZE7 B 204

Chain	Residue
B	TYR67
B	TYR74

---

site_id	AC9
Number of Residues	10
Details	binding site for residue SO4 C 201

Chain	Residue
A	SER2
A	ALA3
A	LYS4
C	SER47
C	TYR48
C	ASN52
C	HOH306
C	HOH318
C	HOH333
C	HOH339

---

site_id	AD1
Number of Residues	7
Details	binding site for residue SO4 C 202

Chain	Residue
C	PRO76
C	GLY77
C	THR78
C	LYS79
C	MET80
C	HOH309
C	HOH320

---

site_id	AD2
Number of Residues	7
Details	binding site for residue ZE7 C 203

Chain	Residue
C	SER40
C	TYR48
C	LYS55
C	TRP59
C	ASN63
C	TYR67
C	TYR74

---

site_id	AD3
Number of Residues	6
Details	binding site for residue SO4 D 201

Chain	Residue
D	GLY77
D	THR78
D	LYS79
D	MET80
D	HOH302
D	HOH342

---

site_id	AD4
Number of Residues	3
Details	binding site for residue ZE7 D 202

Chain	Residue
D	TRP59
D	TYR67
D	TYR74

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	8
Details	Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	8
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	Modified residue: {"description":"N6,N6,N6-trimethyllysine; by CTM1","evidences":[{"source":"PubMed","id":"10791961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	Modified residue: {"description":"N6,N6,N6-trimethyllysine","evidences":[{"source":"PubMed","id":"10821864","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---