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5T67

x-ray structure of the KijD1 C3-methyltransferase from Actinomadura kijaniata in complex with SAH and dTDP-sugar product

Functional Information from GO Data
ChainGOidnamespacecontents
A0016740molecular_functiontransferase activity
A0046872molecular_functionmetal ion binding
B0016740molecular_functiontransferase activity
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 501
ChainResidue
ACYS13
ACYS16
ACYS54
ACYS57

site_idAC2
Number of Residues22
Detailsbinding site for residue SAH A 502
ChainResidue
AASN115
APHE133
AGLU134
APRO135
ASER136
APHE154
APHE155
AALA176
AASN177
ATHR178
AILE182
ATYR184
AJHZ503
AHOH640
AHOH645
AHOH710
AHOH744
APHE72
ASER80
APHE90
AILE112
AGLY113

site_idAC3
Number of Residues28
Detailsbinding site for residue JHZ A 503
ChainResidue
ATYR76
ATYR78
AASN177
AHIS181
ATYR222
AGLU224
AHIS225
AHIS254
AGLY324
ATHR326
AALA327
ALYS328
AASP348
ATHR349
ATHR350
ALYS353
AASN385
AHIS386
AILE390
ALYS393
ASAH502
AHOH641
AHOH714
AHOH731
AHOH790
AHOH804
AHOH881
AHOH914

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 504
ChainResidue
APRO409
AGLU410
AARG412

site_idAC5
Number of Residues7
Detailsbinding site for residue EDO A 505
ChainResidue
AHIS124
AVAL128
AHIS130
AARG314
AASP341
AHOH834
AHOH921

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 507
ChainResidue
AHOH692
AHOH812
AHOH1008
AHOH1050
BHOH736
BHOH747

site_idAC7
Number of Residues5
Detailsbinding site for residue MG A 508
ChainResidue
AHOH626
AHOH693
AHOH912
AHOH991
AHOH1014

site_idAC8
Number of Residues2
Detailsbinding site for residue CL A 509
ChainResidue
AASP25
AHIS300

site_idAC9
Number of Residues4
Detailsbinding site for residue ZN B 501
ChainResidue
BCYS13
BCYS16
BCYS54
BCYS57

site_idAD1
Number of Residues21
Detailsbinding site for residue SAH B 502
ChainResidue
BHOH616
BHOH617
BHOH654
BSER80
BPHE90
BILE112
BGLY113
BASN115
BPHE133
BGLU134
BPRO135
BSER136
BPHE154
BPHE155
BALA176
BASN177
BTHR178
BILE182
BTYR184
BJHZ503
BHOH601

site_idAD2
Number of Residues24
Detailsbinding site for residue JHZ B 503
ChainResidue
BTYR76
BTYR78
BHIS181
BTYR222
BGLU224
BHIS225
BHIS254
BGLY324
BTHR326
BALA327
BLYS328
BASP348
BTHR349
BTHR350
BLYS353
BASN385
BHIS386
BGLU389
BILE390
BLYS393
BSAH502
BHOH609
BHOH627
BHOH642

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO B 504
ChainResidue
BHIS89
BLYS92
BVAL93
BARG96
BGLU249
BARG259

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PDB entries from 2024-07-24

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